Update README.md

oncokb · Nov 6, 2017 · e440b8f · e440b8f
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@@ -9,3 +9,5 @@ Please try
 * `python OncoKBPlots.py -h`
 
 Example input files are under [data](data). An example script is here: [example.sh](example.sh)
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+We recommend processing MAF files by [vcf2maf](https://github.com/mskcc/vcf2maf/) with [MSK override isoforms](https://github.com/mskcc/vcf2maf/blob/master/data/isoform_overrides_at_mskcc) before using the `MafAnnotator` here.