v1.1.3

📝 Documentation

• Specify license in CITATION.cff #760 (@yarikoptic)
• Replace one rogue markdown ref to ref <url>_ RST #759 (@yarikoptic)

Authors: 1

• Yaroslav Halchenko (@yarikoptic)

v1.1.2

🏠 Internal

• Add CITATION.cff based on JOSS paper.md #758 (@yarikoptic)
• Add Jpeg2000 to Docker container #747 (@jennan)

📝 Documentation

• Fix typo #757 (@asmacdo)

Authors: 3

• Austin Macdonald (@asmacdo)
• Maxime Rio (@jennan)
• Yaroslav Halchenko (@yarikoptic)

v1.1.1

🐛 Bug Fix

• Handle cases where dates/times in DICOM are empty strings, not Nones (e.g. after some anonymization) #756 (@jennan @yarikoptic)

Authors: 2

• Maxime Rio (@jennan)
• Yaroslav Halchenko (@yarikoptic)

v1.1.0

🚀 Enhancement

• Add support for a custom seqinfo to extract from DICOMs any additional metadata desired for a heuristic #581 (@yarikoptic @bpinsard)
• codespell: ignore "build" folder which might be on the system #581 (@yarikoptic)

Authors: 2

• Basile (@bpinsard)
• Yaroslav Halchenko (@yarikoptic)

v1.0.2

🐛 Bug Fix

• properly remove GE multiecho bvals/bvecs #728 (@bpinsard)
• datalad sensitive marking fixes #739 (@bpinsard)
• Reject "Missing images" in sensor-dicoms #735 (@chaselgrove)

⚠️ Pushed to master

• Adding workflow figure (@TheChymera)
• Added figures to master branch (@TheChymera)

🏠 Internal

• auto 11.0.5 is needed to avoid hitting some "Error: fatal: ... not an integer" bug #746 (@yarikoptic)
• Fix - auto is in ~/, not in the PATH #745 (@yarikoptic)
• Make it possible to review auto version -v output during release + adjust that workflow step description #743 (@yarikoptic)
• gh-actions: Bump codecov/codecov-action from 3 to 4 #736 (@dependabot[bot] @yarikoptic)
• gh-actions: Bump actions/setup-python from 4 to 5 #723 (@dependabot[bot])

📝 Documentation

• Adjust wording on heuristics page -- do not claim creating some skeleton #741 (@yarikoptic)
• Document how to release and add changelog entries #737 (@asmacdo @yarikoptic)
• Add dianne tutorials #734 (@asmacdo @yarikoptic)
• Add documentation building instructions #730 (@asmacdo)
• Allowing RTD to access images under the same path as README #734 (@TheChymera)
• Using environment figure in about section #730 (@TheChymera)
• Make README more concrete #724 (@asmacdo)

Authors: 6

• @chaselgrove
• @dependabot[bot]
• Austin Macdonald (@asmacdo)
• Basile (@bpinsard)
• Horea Christian (@TheChymera)
• Yaroslav Halchenko (@yarikoptic)

v1.0.1

🐛 Bug Fix

• Drop Python 3.7 support #722 (@yarikoptic)
• ReproIn: give an informative assertion message when multiple values are found #718 (@yarikoptic)
• Convert assertion into a warning that we would not use dicom dir tempate option #709 (@yarikoptic)
• Do not demand --files for all commands, even those which do not care about it (like populate-intended-for) #708 (@yarikoptic)

⚠️ Pushed to master

• Add script to sensor dicoms -- for the error where dcm2niix might or might not fail but issues an Error (@yarikoptic)

🏠 Internal

• Ran pre-commit on everything, black decided to adjust some formatting #721 (@yarikoptic)
• Make sensor-dicoms use gnu-getopt if present (on OSX) #721 (@yarikoptic)

Authors: 1

• Yaroslav Halchenko (@yarikoptic)

v1.0.0

💥 Breaking Change

• gh-actions: Bump actions/checkout from 3 to 4 #703 (@dependabot[bot])

🚀 Enhancement

• Fix inconsistent behavior of existing session when using -d compared to --files option: raise an AssertionError instead of just a warning #682 (@neurorepro)

🐛 Bug Fix

• Various tiny enhancements flake etc demanded #702 (@yarikoptic)
• Boost claimed BIDS version to 1.8.0 from 1.4.1 #699 (@yarikoptic)
• Point to Courtois-neuromod heuristic #702 (@yarikoptic)

🏠 Internal

• Add codespell to lint tox env #706 (@yarikoptic)
• test-compare-two-versions.sh: also ignore differences in HeudiconvVersion field in jsons since we have it there now #685 (@yarikoptic)

📝 Documentation

• Add description of placeholders which could be used in the produced templates #681 (@yarikoptic)

Authors: 3

• @dependabot[bot]
• Michael (@neurorepro)
• Yaroslav Halchenko (@yarikoptic)

v0.13.1

🐛 Bug Fix

• Make .subsecond optional in BIDS/DICOM datetime entries #675 (@yarikoptic)

🏠 Internal

• gh-actions: Bump codespell-project/actions-codespell from 1 to 2 #677 (@dependabot[bot])
• Replace (no longer used) Travis badge with GitHub action one (for test) #677 (@yarikoptic)

Authors: 2

• @dependabot[bot]
• Yaroslav Halchenko (@yarikoptic)

v0.13.0

🚀 Enhancement

• Add type annotations #656 (@jwodder @yarikoptic)
• ENH: Support extracting DICOMs from ZIP files (and possibly other archives) by switching to use shutil.unpack_archive instead of tarfile module functionality #471 (@HippocampusGirl @psadil)
• Allow filling of acq_time when AcquisitionDate AcquisitionTime missing #614 (@psadil)

🐛 Bug Fix

• BF(?): make _setter images be taken as scouts - only DICOMs are saved #570 (@yarikoptic)
• Adjust .mailmap to account for mapping various folks with multiple emails so that git shortlog -sn -e provides entries without duplicates #570 (@yarikoptic)
• Make an embed_dicom_and_nifti_metadata() annotation work on Python 3.7 #673 (@jwodder)
• Merge branch 'feature_dicom_compresslevel' #673 (@yarikoptic)
• Update heudiconv/dicoms.py #669 (@octomike)
• Don't call logging.basicConfig() in __init__.py #659 (@jwodder)

⚠️ Pushed to master

• Mailmapping more contributors (@yarikoptic)
• Adjust comment and remove trailing space flipping linting (@yarikoptic)

🏠 Internal

• Declare custom_grouping return type instead of casting #671 (@jwodder)
• Use pydicom.dcmread() instead of pydicom.read_file() #668 (@jwodder)
• Add sample_nifti.json to .gitignore #663 (@jwodder)
• Write command arguments as lists of strings instead of splitting strings on whitespace #664 (@jwodder)
• Add & apply pre-commit and lint job #658 (@jwodder)
• Fix some strings with \ (make them raw or double-), improve pytest config: move to tox.ini, make unknown warnings into errors #660 (@jwodder)
• Replace py.path with pathlib #654 (@jwodder)

🧪 Tests

• Make test_private_csa_header test write to temp dir #666 (@jwodder)

🔩 Dependency Updates

• Replace third-party mock library with stdlib's unittest.mock #661 (@jwodder)
• Remove kludgy support for older versions of pydicom and dcmstack #662 (@jwodder)
• Remove use of six #655 (@jwodder)

Authors: 5

• John T. Wodder II (@jwodder)
• Lea Waller (@HippocampusGirl)
• Michael (@octomike)
• Patrick Sadil (@psadil)
• Yaroslav Halchenko (@yarikoptic)

v0.12.2

🏠 Internal

• [DATALAD RUNCMD] produce updated dockerfile #652 (@yarikoptic)

Authors: 1

• Yaroslav Halchenko (@yarikoptic)