DeepNovo-AA

General information

Publication: Personalized deep learning of individual immunopeptidomes to identify neoantigens for cancer vaccines. Nature Machine Intelligence, 2020. (https://www.nature.com/articles/s42256-020-00260-4)
To run the workflow on an example dataset, follow step-by-step instructions and Python scripts in the file aa_workflow.py.

Name		Name	Last commit message	Last commit date
Latest commit History 73 Commits
.gitattributes		.gitattributes
LICENSE		LICENSE
README.md		README.md
aa_workflow.py		aa_workflow.py
aa_workflow_step_4_2.py		aa_workflow_step_4_2.py
aa_workflow_step_5.py		aa_workflow_step_5.py
deepnovo_config.py		deepnovo_config.py
deepnovo_cython_modules.pyx		deepnovo_cython_modules.pyx
deepnovo_cython_setup.py		deepnovo_cython_setup.py
deepnovo_main.py		deepnovo_main.py
deepnovo_main_modules.py		deepnovo_main_modules.py
deepnovo_model.py		deepnovo_model.py
deepnovo_postprocess.py		deepnovo_postprocess.py
deepnovo_preprocess.py		deepnovo_preprocess.py
deepnovo_worker_db.py		deepnovo_worker_db.py
deepnovo_worker_denovo.py		deepnovo_worker_denovo.py
deepnovo_worker_io.py		deepnovo_worker_io.py
deepnovo_worker_test.py		deepnovo_worker_test.py
plot.py		plot.py