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ngiangre committed Apr 23, 2018
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34 changes: 34 additions & 0 deletions README.md
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# `Cohorts`

### A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data

Written by Nicholas Giangreco

Copyright (c) 2018 by the Tatonetti Lab

## Goal

Discovery of disease biomarkers or risk factors requires high throughput experimentation on patient's samples collected as a cohort of patients. This clinical data is collected from multiple patient cohorts either within an institutions or among many institutions.

This python package aims to provide standardization in creating a data structure representing each clinical dataset, while allowing for seamless integration of multiple instances.


## Installation

git clone ...
cd ...
pip install setup.py
...

### Prerequisites

python 3

## Contribute

Please do! Both cohort data structure and functionality features are needed.

## License



10 changes: 10 additions & 0 deletions cohorts/__init__.py
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'''
Cohorts : Enabling standardized and reproducible clinical 'omics analysis
=========================================================================
This packages allows handling and structuring datasets from patient cohorts.
'''

from .cohort import Cohort

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