Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
6 changed files
with
3,586 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,34 @@ | ||
# `Cohorts` | ||
|
||
### A python package for standardized and reproducible processing, analysis, and integration of clinical proteomics data | ||
|
||
Written by Nicholas Giangreco | ||
|
||
Copyright (c) 2018 by the Tatonetti Lab | ||
|
||
## Goal | ||
|
||
Discovery of disease biomarkers or risk factors requires high throughput experimentation on patient's samples collected as a cohort of patients. This clinical data is collected from multiple patient cohorts either within an institutions or among many institutions. | ||
|
||
This python package aims to provide standardization in creating a data structure representing each clinical dataset, while allowing for seamless integration of multiple instances. | ||
|
||
|
||
## Installation | ||
|
||
git clone ... | ||
cd ... | ||
pip install setup.py | ||
... | ||
|
||
### Prerequisites | ||
|
||
python 3 | ||
|
||
## Contribute | ||
|
||
Please do! Both cohort data structure and functionality features are needed. | ||
|
||
## License | ||
|
||
|
||
|
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,10 @@ | ||
''' | ||
Cohorts : Enabling standardized and reproducible clinical 'omics analysis | ||
========================================================================= | ||
This packages allows handling and structuring datasets from patient cohorts. | ||
''' | ||
|
||
from .cohort import Cohort |
Oops, something went wrong.