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33 Open 151 Closed
33 Open 151 Closed
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Issues list

Generate samplesheet for nf-core/mag enhancement Improvement for existing functionality
#449 opened Feb 15, 2024 by CarsonJM
4
Add Nanoq for Nanopore reads enhancement Improvement for existing functionality
#415 opened Nov 9, 2023 by sofstam 1.2.0 - Bouncy Basenji
Allow multiple bracken profiles with different -l levels from the same kraken2 report enhancement Improvement for existing functionality
#410 opened Oct 27, 2023 by MajoroMask 1.2.0 - Bouncy Basenji
1
General version update of all tools enhancement Improvement for existing functionality
#403 opened Oct 12, 2023 by jfy133 1.2.0 - Bouncy Basenji
@jfy133
Allow hibf in ganon? enhancement Improvement for existing functionality
#401 opened Oct 11, 2023 by SannaAb 1.2.0 - Bouncy Basenji
@jfy133 @sofstam
8
Simplify test profiles in CI test enhancement Improvement for existing functionality
#374 opened Sep 14, 2023 by LilyAnderssonLee 1.2.0 - Bouncy Basenji
@jfy133 @LilyAnderssonLee
1
Add small files to tower.yml enhancement Improvement for existing functionality
#373 opened Sep 14, 2023 by LilyAnderssonLee 1.2.0 - Bouncy Basenji
@LilyAnderssonLee
Add Eukdetect enhancement Improvement for existing functionality
#361 opened Sep 4, 2023 by maxibor
KMCP profile mode forced for all databases bug Something isn't working enhancement Improvement for existing functionality
#358 opened Sep 3, 2023 by jfy133 1.2.0 - Bouncy Basenji
Profiling: consider cross-database merge for KMCP enhancement Improvement for existing functionality
#353 opened Aug 18, 2023 by jfy133 1.5.0 - Extravagant Estrela
Decontamination: add hostile for host removal enhancement Improvement for existing functionality
#346 opened Aug 8, 2023 by jfy133 1.4.0 - Dystopic Doberman
@LilyAnderssonLee
5
Ideas: more post-processing functionality enhancement Improvement for existing functionality question Further information is requested
#335 opened Jul 24, 2023 by jfy133
2
Add support for MMSeqs2 enhancement Improvement for existing functionality
#323 opened Jul 13, 2023 by jfy133 1.2.0 - Bouncy Basenji
@sofstam
Consider switching host removal to graph based reference enhancement Improvement for existing functionality
#297 opened May 22, 2023 by jfy133
10
Taxpasta only accepts a single taxonomy although multiple could be present in database samplesheet bug Something isn't working enhancement Improvement for existing functionality
#293 opened May 11, 2023 by jfy133 1.2.0 - Bouncy Basenji
3
Implement kaiju-mergeOutputs enhancement Improvement for existing functionality help wanted Extra attention is needed question Further information is requested
#288 opened Apr 26, 2023 by artur-matysik
5
Provide functionality to create nf-core/mag samplesheet from final reads enhancement Improvement for existing functionality
#284 opened Apr 20, 2023 by jfy133 1.3.0 - Crazy Corgi
Split up MultiQC run reports between long and short reads enhancement Improvement for existing functionality
#218 opened Jan 23, 2023 by jfy133 1.2.0 - Bouncy Basenji
Review for PacBio compatibility question Further information is requested
#184 opened Dec 7, 2022 by jfy133 1.3.0 - Crazy Corgi
@sofstam
1
Profiling of long-reads with mOTUs enhancement Improvement for existing functionality
#182 opened Dec 6, 2022 by sofstam 1.2.0 - Bouncy Basenji
@sofstam
3
Optimisation of the resource settings enhancement Improvement for existing functionality
#154 opened Oct 25, 2022 by sofstam
Consider default parameters for profilers question Further information is requested
#151 opened Oct 21, 2022 by Midnighter
14
Extend the profiling workflow by aligning matched reads to profiled genomes enhancement Improvement for existing functionality
#149 opened Oct 19, 2022 by Midnighter 1.5.0 - Extravagant Estrela
1
Add alternative long-read (nanopore) preprocessing tools enhancement Improvement for existing functionality
#145 opened Oct 13, 2022 by sofstam 1.2.0 - Bouncy Basenji
@LilyAnderssonLee @sofstam
16
Classifier: metaxa2 enhancement Improvement for existing functionality
#139 opened Oct 10, 2022 by vmikk 1.3.0 - Crazy Corgi
10
ProTip! Exclude everything labeled bug with -label:bug.