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Community feedback needed: Add tutorials/faqs describing different usages to the website #955

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FriederikeHanssen opened this issue Feb 28, 2023 · 3 comments
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@FriederikeHanssen
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Description of feature

We are looking into expanding the documentation by adding tutorials for different usages. For this we would love some community feedback:

What are some questions you asked yourself when starting out? What would you like to see explained in more detail? Where do you find the documentation is lacking?

@FriederikeHanssen FriederikeHanssen added the enhancement New feature or request label Feb 28, 2023
@maxulysse
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@egenomics
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  • How to use sarek when library was done using UMIs. Starting at different steps (a) UMIs already present in the fastq header, but not in sequence, b) original bcls, etc
  • How to provide different parameters for certain tools

@GeertvanGeest
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As far as I know, --intervals would need to be either a 3 column bed, or a 5 column bed with estimated seconds in the score column. Anything else will/can result in failures (at least with gatk). Would be nice to make this more explicit.

@maxulysse maxulysse pinned this issue Feb 15, 2024
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