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Region 536904516..536917009 cannot be stored in a tbi index #1500

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fan040 opened this issue May 5, 2024 · 0 comments
Closed

Region 536904516..536917009 cannot be stored in a tbi index #1500

fan040 opened this issue May 5, 2024 · 0 comments
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@fan040
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fan040 commented May 5, 2024

Description of the bug

I currently have an error that my reference genome is about 14Gb, causing my bed file to be too large to establish tbi index, I would like to know how to modify it to establish csi index, thank you for your help.

Command used and terminal output

Command error:
  INFO:    Environment variable SINGULARITYENV_TMPDIR is set, but APPTAINERENV_TMPDIR is preferred
  INFO:    Environment variable SINGULARITYENV_NXF_TASK_WORKDIR is set, but APPTAINERENV_NXF_TASK_WORKDIR is preferred
  INFO:    Environment variable SINGULARITYENV_NXF_DEBUG is set, but APPTAINERENV_NXF_DEBUG is preferred
  [E::hts_idx_check_range] Region 536904516..536917009 cannot be stored in a tbi index. Try using a csi index
  tbx_index_build failed: up_down_2k_promoters.all.bed.gz

Work dir:
  /cluster/home/fanrong/work_lei/BSA/02_ZS/02_mapping_1/work/f9/901b8ac1827e6196b65b21ba97e017

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`

 -- Check '.nextflow.log' file for details

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@fan040 fan040 added the bug Something isn't working label May 5, 2024
@fan040 fan040 closed this as completed May 20, 2024
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