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Hi it is my first time trying to use sarek pipeline and in general nexflow and nf-core. I was to run only the annotation part with input vcf.
I am geting the following error and i have no clue or idea how to solve it
Do you know any solution ?
Command used and terminal output
`
$ nextflow run nf-core/sarek -r 3.4.0 profile test --input AC1/vcf_single_AC1.csv --outdir testResutsAC1_new --step annotate --tools snpeffERROR ~ Error executing process > 'NFCORE_SAREK:SAREK:PREPARE_GENOME:UNZIP_RT'Caused by: Timeout waiting for connection from pool -- Check '.nextflow.log' file for details`
Description of the bug
Hi it is my first time trying to use sarek pipeline and in general nexflow and nf-core. I was to run only the annotation part with input vcf.
I am geting the following error and i have no clue or idea how to solve it
Do you know any solution ?
Command used and terminal output
Relevant files
vcf_single_AC1.csv
AC1_HC_S2_008_HC_ignore_softclips_hg38liftover_AF005.vcf.gz
System information
Mac book Pro M2 - macOS
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