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ERROR Timeout waiting for connection from pool #1447

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zisis86 opened this issue Mar 21, 2024 · 0 comments
Open

ERROR Timeout waiting for connection from pool #1447

zisis86 opened this issue Mar 21, 2024 · 0 comments
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bug Something isn't working

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@zisis86
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zisis86 commented Mar 21, 2024

Description of the bug

Hi it is my first time trying to use sarek pipeline and in general nexflow and nf-core. I was to run only the annotation part with input vcf.
I am geting the following error and i have no clue or idea how to solve it
Do you know any solution ?

Command used and terminal output

`
$ nextflow run nf-core/sarek -r 3.4.0 profile test --input AC1/vcf_single_AC1.csv --outdir testResutsAC1_new --step annotate --tools snpeff

ERROR ~ Error executing process > 'NFCORE_SAREK:SAREK:PREPARE_GENOME:UNZIP_RT'

Caused by:
  Timeout waiting for connection from pool


 -- Check '.nextflow.log' file for details

`

Relevant files

vcf_single_AC1.csv
AC1_HC_S2_008_HC_ignore_softclips_hg38liftover_AF005.vcf.gz

System information

Mac book Pro M2 - macOS

@zisis86 zisis86 added the bug Something isn't working label Mar 21, 2024
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