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Good evening,
I am experiencing problems with Sarek's pipeline. When I try to remove the adapters from my WES data, the dragmap tool runs into "Segmentation Fault".
Do you have any idea what the problem might be?
Description of the bug
Good evening,
I am experiencing problems with Sarek's pipeline. When I try to remove the adapters from my WES data, the dragmap tool runs into "Segmentation Fault".
Do you have any idea what the problem might be?
Command line:
nextflow run main.nf
--input sample_sheet_3.csv
--genome GATK.GRCh38
--aligner dragmap
--save_output_as_bam
--step mapping
--outdir './results'
--save_output_as_bam
--wes false
-resume
-profile aws
--trim_fastq
Command used and terminal output
No response
Relevant files
No response
System information
No response
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