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add apeglm log fold change shrinkage #152

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bumproo opened this issue Aug 18, 2023 · 2 comments
Open

add apeglm log fold change shrinkage #152

bumproo opened this issue Aug 18, 2023 · 2 comments
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enhancement New feature or request

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@bumproo
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bumproo commented Aug 18, 2023

Description of feature

this is an alternative to the ashr method already included in the pipeline
@bumproo bumproo added the enhancement New feature or request label Aug 18, 2023
@pinin4fjords
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pinin4fjords commented Oct 5, 2023 •
edited

IIRC I had trouble with dependency management related to this, which I didn't have time to resolve at the time.

But this will need a PR on the DESeq2 module, with a new test for the new type of shrinkage.

@pinin4fjords pinin4fjords mentioned this issue Oct 5, 2023
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Need module PR first nf-core/modules#3913

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