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30 Open 43 Closed
30 Open 43 Closed
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Issues list

Include test of PE data enhancement Improvement for existing functionality
#189 opened May 16, 2024 by k1sauce
Include a test with uncompressed flow cell enhancement Improvement for existing functionality
#188 opened May 15, 2024 by k1sauce
Add demultipexing for MGI sequencing machines enhancement Improvement for existing functionality
#184 opened May 2, 2024 by ziadbkh
Reads dropped when demultiplexing a sample across lanes. bug Something isn't working
#182 opened Mar 21, 2024 by AaronNHart
nf-core documentation error bug Something isn't working
#172 opened Feb 8, 2024 by rulixxx
Some singularity images are missing when using nf-core download demultiplex bug Something isn't working
#164 opened Jan 8, 2024 by Aratz
4
Add samplesheet generation
#149 opened Oct 24, 2023 by edmundmiller
Update the citation tools
#146 opened Oct 17, 2023 by edmundmiller
Add option to run CheckQC after demultiplexing with bcl2fastq enhancement Improvement for existing functionality
#143 opened Oct 10, 2023 by matrulda
2
Update samplesheet in usage
#139 opened Aug 23, 2023 by edmundmiller
Support different input schema's for different demultiplexers enhancement Improvement for existing functionality
#138 opened Aug 22, 2023 by edmundmiller
1
Fastq files missing from output / report, 10x single cell bug Something isn't working
#135 opened Aug 1, 2023 by rifius
@matthdsm
2
Ambiguous sampleSheet.csv structure bug Something isn't working
#116 opened May 25, 2023 by Gian77
2
groovify modules/local/csv2tsv.nf enhancement Improvement for existing functionality
#110 opened Apr 24, 2023 by maxulysse
Input file name collision occurs for fastp and falco bug Something isn't working
#106 opened Apr 19, 2023 by kkami1115
2
-profile test failing due to relative path in flowcell_input.csv bug Something isn't working
#103 opened Mar 20, 2023 by jgbaum
1
1
Clean up samplesheet reading enhancement Improvement for existing functionality
#102 opened Mar 15, 2023 by edmundmiller
Remove confusing samplesheet language bug Something isn't working
#98 opened Feb 28, 2023 by edmundmiller
8
Documentation and file type for SampleSheet.csv enhancement Improvement for existing functionality
#90 opened Feb 2, 2023 by mschubert
3
For sample demultiplexing from FASTQs, add fqtk. enhancement Improvement for existing functionality
#87 opened Jan 20, 2023 by edmundmiller
1
8
skip_tools comment says list, schema says string bug Something isn't working
#84 opened Jan 18, 2023 by edmundmiller
@matthdsm
What is the status of the test_full? enhancement Improvement for existing functionality
#81 opened Jan 9, 2023 by maxulysse
4
Test Groovy Functions enhancement Improvement for existing functionality
#74 opened Nov 24, 2022 by edmundmiller
6 tasks
2
RFC: Convert to stand-alone subworkflow(s) enhancement Improvement for existing functionality
#60 opened Oct 6, 2022 by matthdsm
1
Add support for WatchPath enhancement Improvement for existing functionality
#59 opened Oct 6, 2022 by matthdsm
ProTip! Exclude everything labeled bug with -label:bug.