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Nextflow Error: Unable to dump output of process 'null' -- Cause: java.nio.file.NoSuchFileException

wsstoregene started May 1, 2024 in General

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Directory not found universc

HafsaKM started Apr 24, 2024 in General

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Standardized "versions" output format and handling

stevekm started Apr 17, 2024 in General

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The AWS Access Key Id you provided does not exist in our records.
storage/aws
Lunana0110 started Oct 16, 2023 in General

3
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Software version reporting best practices

glormph started Mar 14, 2024 in General

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WorkDir empty for execution of .command.sh

Alexander-saes started Mar 8, 2024 in General

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Nextflow crash on AWS Batch with transition error
executor/aws-batch
hkarakurt8742 started Mar 5, 2024 in General

1
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Comparing the outputs of two processes

prmac started Mar 1, 2024 in General

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Process multiple samples at once

justsharan started Jan 19, 2024 in General · Closed

2
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Setting up Fresh on a bunch of Linux boxes.

chrisalys started Jan 18, 2024 in General

4
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publishDir directive not working with 'link' mode if the process is run inside a Docker (permissions)

Rmulet started Dec 8, 2023 in General

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Problem with s3 region solved in k8s and third party block storage (S3), but fails with Fusion
executor/k8s storage/aws storage/fusion
dariogf started Nov 1, 2023 in General

12
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Attempting to introspect the workflow breaks the cache

dreavjr started Sep 14, 2023 in General · Closed

2
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IO file storm when pipelines are run at scale

PeteClapham started Aug 7, 2023 in General

5
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Channel join behaving in surprising (incorrect?) ways
lang/operators
antoniofabio started Mar 16, 2021 in General

5
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only one chromosome is being processed from channel of 24

complexgenome started Jul 18, 2023 in General · Closed

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how do I list files of a sample from different lanes?

complexgenome started Jul 15, 2023 in General · Closed

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unable to generate output file - pass chromsome

complexgenome started Jul 15, 2023 in General · Closed

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error: Command exit status: 255

complexgenome started Jul 15, 2023 in General · Closed

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run per chromsome - error - Unknown process directive: $

complexgenome started Jul 15, 2023 in General · Closed

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Can I create a custom executor?

fa2k started Jun 14, 2023 in General

2
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When would the dag file be generated?

Tong-Chen started Jun 7, 2023 in General

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Collecting multiple directories with the same name in one process
lang/processes
Lehmann-Fabian started Mar 26, 2021 in General

13
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Why not make -o pipefail the default for all shell scripts?

tfenne started Mar 23, 2023 in General

5
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configure Nextflow to execute jobs in existing pool

gabimirea started Jan 24, 2023 in General

1