re-black

m2g/graph.py

@@ -10,6 +10,7 @@
 
 
 import csv
+
 # standard library imports
 import os
 import time
@@ -21,6 +22,7 @@
 import matplotlib
 import networkx as nx
 import nibabel as nib
+
 # package imports
 import numpy as np
 from dipy.tracking._utils import _mapping_to_voxel, _to_voxel_coordinates

m2g/register.py

@@ -25,6 +25,7 @@
 from m2g.stats.qa_fast import qa_fast_png
 from m2g.stats.qa_reg import reg_mri_pngs
 from m2g.stats.qa_skullstrip import gen_overlay_pngs
+
 # m2g imports
 from m2g.utils import gen_utils, reg_utils
 

m2g/scripts/m2g_bids.py

@@ -16,6 +16,7 @@
 import os
 import re
 import shutil
+
 # standard library imports
 import sys
 from argparse import ArgumentParser
@@ -25,10 +26,15 @@
 
 from m2g.functional.m2g_func import func_dir_reorg, m2g_func_worker
 from m2g.scripts.m2g_dwi_pipeline import m2g_dwi_worker
+
 # m2g imports
 from m2g.utils import cloud_utils, gen_utils
-from m2g.utils.gen_utils import (DirectorySweeper, as_directory,
-                                 check_dependencies, is_bids)
+from m2g.utils.gen_utils import (
+    DirectorySweeper,
+    as_directory,
+    check_dependencies,
+    is_bids,
+)
 
 
 def get_atlas(atlas_dir, vox_size):

m2g/scripts/m2g_cloud.py

@@ -11,6 +11,7 @@
 import json
 import os
 import re
+
 # standard library imports
 import subprocess
 import sys
@@ -22,8 +23,7 @@
 # m2g imports
 import m2g
 from m2g.utils import gen_utils
-from m2g.utils.cloud_utils import (get_credentials, get_matching_s3_objects,
-                                   s3_client)
+from m2g.utils.cloud_utils import get_credentials, get_matching_s3_objects, s3_client
 
 
 def batch_submit(

m2g/scripts/m2g_dwi_pipeline.py

@@ -11,6 +11,7 @@
 # multithreading
 import multiprocessing as mp
 import os
+
 # standard library imports
 import shutil
 import time

m2g/track.py

@@ -12,20 +12,22 @@
 import os
 
 import nibabel as nib
+
 # external package imports
 import numpy as np
 from dipy.data import get_sphere
 from dipy.direction import ProbabilisticDirectionGetter, peaks_from_model
-from dipy.reconst.csdeconv import (ConstrainedSphericalDeconvModel,
-                                   recursive_response)
+from dipy.reconst.csdeconv import ConstrainedSphericalDeconvModel, recursive_response
 from dipy.reconst.dti import TensorModel, fractional_anisotropy, quantize_evecs
 from dipy.reconst.shm import CsaOdfModel
 from dipy.tracking import utils
-from dipy.tracking.local_tracking import (LocalTracking,
-                                          ParticleFilteringTracking)
-from dipy.tracking.stopping_criterion import (ActStoppingCriterion,
-                                              BinaryStoppingCriterion,
-                                              CmcStoppingCriterion)
+from dipy.tracking.local_tracking import LocalTracking, ParticleFilteringTracking
+from dipy.tracking.stopping_criterion import (
+    ActStoppingCriterion,
+    BinaryStoppingCriterion,
+    CmcStoppingCriterion,
+)
+
 # dipy imports
 from dipy.tracking.streamline import Streamlines
 

m2g/utils/cloud_utils.py

@@ -7,6 +7,7 @@
 
 import os
 import sys
+
 # standard library imports
 from configparser import ConfigParser
 

m2g/utils/gen_utils.py

@@ -9,6 +9,7 @@
 
 import functools
 import json
+
 # system imports
 import os
 import re

m2g/utils/reg_utils.py

@@ -13,12 +13,18 @@
 import nibabel as nib
 import nilearn.image as nl
 import numpy as np
-from dipy.align.imaffine import (AffineRegistration, MutualInformationMetric,
-                                 transform_origins)
+from dipy.align.imaffine import (
+    AffineRegistration,
+    MutualInformationMetric,
+    transform_origins,
+)
 from dipy.align.imwarp import SymmetricDiffeomorphicRegistration
 from dipy.align.metrics import CCMetric
-from dipy.align.transforms import (AffineTransform3D, RigidTransform3D,
-                                   TranslationTransform3D)
+from dipy.align.transforms import (
+    AffineTransform3D,
+    RigidTransform3D,
+    TranslationTransform3D,
+)
 from dipy.viz import regtools
 
 # m2g imports