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j1c committed Apr 8, 2024
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3 changes: 0 additions & 3 deletions README.md
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[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.595684.svg)](https://doi.org/10.5281/zenodo.595684)
[![Code Climate](https://codeclimate.com/github/neurodata/ndmg/badges/gpa.svg)](https://codeclimate.com/github/neurodata/ndmg)
[![DockerHub](https://img.shields.io/docker/pulls/neurodata/m2g.svg)](https://hub.docker.com/r/neurodata/m2g)
[![OpenNeuro](http://bids.neuroimaging.io/openneuro_badge.svg)](https://openneuro.org)

![](./docs/nutmeg.png)

NeuroData's MR Graphs package, **m2g**, is a turn-key pipeline which uses structural and diffusion MRI data to estimate multi-resolution connectomes reliably and scalably.

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6 changes: 3 additions & 3 deletions docs/install.rst
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====================
.. TODO: update package versions
The m2g pipeline was developed and tested primarily on Mac OSX, Ubuntu (12, 14, 16, 18), and CentOS (5, 6);
The m2g pipeline was developed and tested primarily on Mac OSX, Ubuntu (16, 18, 20, 22), and CentOS (5, 6);

Made to work on Python 3.6;
Made to work on Python 3.8;

Is wrapped in a Docker container;

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Takes approximately 1-core, 8-GB of RAM, and 1 hour to run for most datasets.

While m2g is quite robust to Python package versions (with only few exceptions, mentioned in the installation guide), an example of possible versions (taken from the m2g Docker Image with version v0.2.0) is shown below. Note: this list excludes many libraries which are standard with a Python distribution, and a complete list with all packages and versions can be produced by running pip freeze within the Docker container mentioned above. ::
While m2g is quite robust to Python package versions (with only few exceptions, mentioned in the installation guide), an example of possible versions (taken from the m2g Docker Image with version v0.3.0) is shown below. Note: this list excludes many libraries which are standard with a Python distribution, and a complete list with all packages and versions can be produced by running pip freeze within the Docker container mentioned above. ::

awscli==1.16.210 , boto3==1.9.200 , botocore==1.12.200 , colorama==0.3.9 , configparser>=3.7.4 ,
Cython==0.29.13 , dipy==0.16.0 , duecredit==0.7.0 , fury==0.3.0 , graspy==0.0.3 , ipython==7.7.0 ,
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