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@mortazavilab
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Pinned

  1. mortazavilab/Topyfic mortazavilab/Topyfic Public

    Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering and harmony for single cell epigenomics data

    Jupyter Notebook 9 1

  2. mortazavilab/PyWGCNA mortazavilab/PyWGCNA Public

    PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

    Jupyter Notebook 190 45

  3. mortazavilab/TranscriptClean mortazavilab/TranscriptClean Public

    Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome

    Python 61 17

  4. Topyfic_analysis Topyfic_analysis Public

    Data processing, analysis and figures for Topyfic paper

    Jupyter Notebook

  5. modelAD_piplines modelAD_piplines Public

    Pipelines for analyzing model AD data in the Mortazavi lab

    Jupyter Notebook

  6. mortazavilab/5xFAD_WGCNA mortazavilab/5xFAD_WGCNA Public

    Systematic Phenotyping and Characterization of the 5xFAD mouse model of Alzheimer’s Disease

    R