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Tractography Tractography Tractography!

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@TheJaeger TheJaeger released this 13 Jan 13:38
· 49 commits to master since this release
v1.0.0
d6d29c2
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This update introduces tractography via DTI, DKI, and FBI ODFs to parse into MRtrix3's tckgen. Additionally, .fib files are also created for tractography through DSI Studio.

PyDesigner is now also published on PyPI for easy installation. Simple type pip install PyDesigner-DWI for easy installation. It is no longer a requirement to download this repository and manually installing PyDesigner.

Added

  • Tractography modules tractography.dsistudio, tractography.odf,
    tractography.sphericalsampling
  • ODF computations and spherical harmonic expansion for DTI and DKI
  • Option to add user-defined map for tractography stopping criteria
  • Added option to import multiple custom maps into DSI studio file
  • PyDesigner can now be pulled from PyPI with pip install PyDesigner-DWI

Changed

  • Fixed a logic in multi-TE detection algorithm that prevented certain
    datasets from processing
  • Overhauled how inputs paths are entered. Paths to input DWIs can now
    be provided to PyDesigner without comma separation
  • Udpate des2dke.m for compatibility with nii_preprocess
  • Replaced FBI SH with tesseral SH

Removed

  • None
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