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vcf2maf v1.6.21

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@ckandoth ckandoth released this 24 Apr 03:03
· 5 commits to main since this release
v1.6.21
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ckandoth Cyriac Kandoth
GPG key ID: AA0605139C7E8B0B
Learn about vigilant mode.
  • Important: The output columns have changed with the removal of ExAC_* data in favor of gnomAD_* data
  • Important: FILTER tag common_variant is now applied if any of the gnomAD subpopulation AFs are >0.04%
  • New options --vep-custom and --vep-config to operate VEP options --custom and --config respectively
  • New option --retain-ann to extract more data from INFO/ANN or INFO/CSQ including VEP custom fields
  • New option --vep-overwrite to overwrite a VEP annotated .vep.vcf file if found, instead of erroring out
  • New option --verbose to show more status messages during runtime
  • Old option --filter-vcf removed in favor of --vep-custom which can do the same thing but better

Credits to @alanhoyle for these new features!

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