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vcf2maf v1.6.15
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@ckandoth ckandoth released this 08 Feb 19:32
v1.6.15
1b16b35
  • vcf2maf now supports Delly VCFs, producing MAFs with fields needed by cBioPortal.
  • Fix: Remove INFO/SVTYPE when ALT is defined (e.g. Pindel), or else VEP skips transcript-level effect.
  • Using --remap-chain now retains original loci in a column named REMAPPED_POS.
  • New chain files added for GRCh38_to_GRCh37 and GRCm38_to_NCBIM37.
  • New unit tests with variants that are tricky to annotate.
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