adding line in procSnps() to ensure required field order #9
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| on: [push, pull_request] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.label }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: windows-latest, r: 'devel' } | |
| - {os: windows-latest, r: 'release' } | |
| - {os: macOS-latest, r: 'devel' } | |
| - {os: macOS-latest, r: 'release' } | |
| - {os: ubuntu-20.04, r: 'devel' } | |
| - {os: ubuntu-20.04, r: 'release' } | |
| - {os: ubuntu-20.04, r: 'oldrel' } | |
| - {os: ubuntu-20.04, r: '3.3' } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| ## R CMD check | |
| _R_CHECK_CRAN_INCOMING_: false | |
| _R_CHECK_LENGTH_1_CONDITION_: true | |
| _R_CHECK_LENGTH_1_LOGIC2_: true | |
| _R_CHECK_MATRIX_DATA_: true | |
| _R_CHECK_SUGGESTS_ONLY_: true | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-tinytex@v1 | |
| - run: | | |
| tlmgr --version | |
| tlmgr install ae ## Needed by vignette | |
| tlmgr list --only-installed | |
| - uses: r-lib/actions/setup-pandoc@master | |
| - uses: r-lib/actions/setup-r@master | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Query R package dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Cache R packages | |
| if: runner.os != 'Windows' | |
| uses: actions/cache@v1 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
| - name: Install R package system dependencies (Linux) | |
| if: runner.os == 'Linux' | |
| env: | |
| RHUB_PLATFORM: linux-x86_64-ubuntu-gcc | |
| run: | | |
| Rscript -e "remotes::install_github('r-hub/sysreqs')" | |
| sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") | |
| sudo -s eval "$sysreqs" | |
| sudo apt install -y libcurl4-openssl-dev | |
| - name: Install R package dependencies | |
| run: | | |
| remotes::install_deps(dependencies = TRUE) | |
| shell: Rscript {0} | |
| - name: Install 'rcmdcheck' | |
| run: | | |
| remotes::install_cran("rcmdcheck") | |
| library(rcmdcheck) ## triggers an error, if installation failed | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| capabilities() | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@master | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |