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PKGBUILDs

This is a collection of PKGBUILDs I maintain for the Archlinux User Repository

Rationale

AUR is git-based, but I wanted to have a collection of my build scripts on Github without duplicating them.

Here, I use git subtree to maintain each package in this repository and at the same time be able to push to the AUR.

Adding a package from AUR

Add a package that already exists in the AUR to the local tree. Always try this first when submitting a new package, the repository may exist but not be listed on the web page.

./init_or_update.sh <package>

Committing

Just use a normal git commit, but ideally commit changes to each PKGBUILD directory separately.

Uploading to AUR

This pushes packages to both AUR (subtree) and Github (full repository). If the package does not exist in AUR it will be created:

./aur_upload.sh <pkgname(s)>

Removing a package

This will remove the local directory and the package remote. To fully delete the package, file a deletion request.

./remove_package <pkgname(s)>

Package versions

adaptagrams autodock-vina biomart ncbi-blast+ dunnart emboss fasta firehose-get gnome:drop-down-terminal gnome:impatience gnome:pixel-saver gnome:soft-brightness gnome:web-search-dialog hmmer htscodecs imagej interbench ironpython laspack texlive:enumitem texlive:mathabx texlive:media9 texlive:pdfpages libdai libnuml libsbml libsedml multiqc muscle-sequence-alignment ncbi-toolkit paradigm pathvisio pdfposter phylip phyml primer3 pymol-autodock python:argparse-dataclass python:bioservices python:cgen python:colormath python:easydev python:lzstring python:multipledispatch python:pyaml-env python:pybigwig python:pydstool python:rchitect python:simpy python:snakemake-interface-common python:snakemake-interface-executor-plugins python:snakemake-interface-report-plugins python:snakemake-interface-storage-plugins python:spectra python:throttler radian snakemake staden staden-io-lib tcoffee tklib vim-wombat xmacro

Packages moved to official repositories

git-lfs gperftools python:datrie python:llvmlite python:numba symengine