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55 Open 138 Closed
55 Open 138 Closed
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Issues list

GimmeMotifs installed but can't install celloracle because of 'Failed building wheel for gimmemotifs'
#202 opened May 25, 2024 by jianwu1
Can't convert from Seurat to anndata #8928
#201 opened May 24, 2024 by xiaomaolxc
We don't have default motifs for your species, Please specify motif data by yourself.
#200 opened May 17, 2024 by Roger-GOAT
1
Loading CellOracle takes too much time
#199 opened May 10, 2024 by CYWu111
Heterogeneous dataset subsetting and number of cells/cluster
#197 opened May 8, 2024 by acv21
model overfitting
#195 opened Apr 27, 2024 by tkisss
Request for 3D UMAP
#194 opened Apr 8, 2024 by fafa92
Problem when using a custom genomes_dir for TF scan
#193 opened Apr 3, 2024 by VictorCurean
2
Plot cell types under 'development' flow grid
#192 opened Mar 28, 2024 by alexandrelanau
tfinfo and GRN files
#191 opened Mar 27, 2024 by momur
4
Request for Schistosoma japonicum genome
#189 opened Mar 25, 2024 by shycheng
Building Base GRN with multiple samples
#186 opened Mar 6, 2024 by shahrozeabbas
Vector Plots
#185 opened Mar 5, 2024 by sarah-chapin
1
Projecting the simulated flows on a specific cluster
#184 opened Mar 4, 2024 by jyang635
1
Adding new reference genome: Rn7
#182 opened Feb 28, 2024 by MartijnLvandenBroek
Installation issue on Mac book pro/ VS Code
#181 opened Feb 13, 2024 by jw235
1
New genomes promoter_based_GRN
#180 opened Jan 26, 2024 by dnjst
Can we make custom genome annotation by custom gff and fasta file?
#177 opened Jan 18, 2024 by duchen-whu
Question about edge filtering strategy of CellOracle
#176 opened Jan 18, 2024 by R-Krait
Estimating cell density after perturbation
#175 opened Jan 17, 2024 by jordiabante
Failed to load celloracle
#171 opened Jan 10, 2024 by YuchenXiangEMBL
2
More than 3000 genes
#169 opened Dec 29, 2023 by sarah-chapin
1
Is CellOracle suitable for analysing cross-organ development for the same cell type?@JiaGuangshuai
#168 opened Dec 25, 2023 by Counts-Xin
Could you implement the genome of Parasteatoda tepidariorum as well, please?
#165 opened Nov 9, 2023 by unaginekomoyashi
Is it possible to adjust the clustering information of all cells to the same value in order to investigate the feasibility of identifying regulons?
#164 opened Nov 7, 2023 by liuzj039
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