Genotype Harmonizer 1.4.27

Solves bug that caused invalid file sizes to sometimes be written to bgen.bgi files.

Genotype-IO 1.0.6

Improved handling of different VCF genotype format fields.
Solves bug that caused invalid file sizes to be written to bgen.bgi files.

Genotype Harmonizer 1.4.26

Improved behavior in handling different VCF genotype format fields and the conversion of these genotypes into BGEN files.

Genotype Harmonizer 1.4.25

Fixed problem with binaries of previous build.

Genotype Harmonizer 1.4.24

Minor bug fix

Manual: https://github.com/molgenis/systemsgenetics/wiki/Genotype-Harmonizer

Decon-eQTL v1.4

• Allow missing genotypes (code as -1)
• Fix command line help printing bug
• Fix bug where 2 cell types crashes with nullpointer error

Decon-eQTL v1.3

Version 1.3 of Decon-eQTL. This is the version that was used for the manuscript:

Aguirre-Gamboa, Raúl, et al. "Deconvolution of bulk blood eQTL effects into immune cell subpopulations." BMC Bioinformatics 21.1 (2020): 1-23.

Genotype Harmonizer 1.4.23

Added BGEN (https://www.well.ox.ac.uk/~gav/bgen_format/) support to Genotype Harmonizer and GenotypeIO.

See:
https://github.com/molgenis/systemsgenetics/wiki/Genotype-Harmonizer
https://github.com/molgenis/systemsgenetics/wiki/Genotype-IO

GADO commandline

Merge pull request #542 from PatrickDeelen/master

Version bump to make release

Systems Genetics 1.4.0_18-11.1

Merge pull request #514 from PatrickDeelen/master

Lot of stuff. Mostly genenetwork