This organization holds experimental and archived repositories from the Open Microscopy Environment. You can find the official repositories under https://github.com/ome or the documentation under https://www.openmicroscopy.org/.
Popular repositories
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bio-formats-matlab
bio-formats-matlab Public archive**Experimental** Bio-Formats Matlab and GNU Octave bindings
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omero-py-alpine-docker
omero-py-alpine-docker PublicMinimal OMERO.py image based on Alpine Linux
Dockerfile 1
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centos-systemd-jupyter-notebook
centos-systemd-jupyter-notebook PublicBase notebook for running bash in JupyterHub with a CentOS 7 System image
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ome-sysops-notebooks
ome-sysops-notebooks PublicNotebooks with examples of managing the OME Kubernetes systems
Jupyter Notebook 1
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idr0083-sars-cov2-notebook
idr0083-sars-cov2-notebook PublicAn example of reading a 13 gigapixel SARS-CoV-2 image (around 27 GB on disk) in Jupyter using Zarr
Repositories
Showing 10 of 53 repositories
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- bio-formats-imagej Public archive
**Experimental** Bio-Formats ImageJ plugin for image import and export
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- staged-recipes Public Forked from conda-forge/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
- idr0015-tara-oceans-geospatial Public
This notebook shows how to plot geospatial metadata attached to the samples gathered by the Tara Oceans project.
- idr0083-sars-cov2-notebook Public
An example of reading a 13 gigapixel SARS-CoV-2 image (around 27 GB on disk) in Jupyter using Zarr
- idr-montage Public
