This repository provides R script for the Tea plant microbiome analysis， including:
- Read microbial abundance and taxon files
- Input metadata for soil properties, heavy metals, amino acids, and polyphenols.
- Generate phyloseq object
- Normolization with DESeq2
- Alpha-diversity
- Ordination
- Microbial compositions
- Nestedness of microbial communities
- Source tracker
- Enriched and Depleted taxa
- Core-OTUs
- Normalized stochaistic ratio
- Distance-decay
- Environmental drivers
- Co-occurrence network