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31 Open 91 Closed
31 Open 91 Closed
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Issues list

Fix type annotations in Scheduler
#188 opened Jun 4, 2024 by mbthornton-lbl
@mbthornton-lbl
workflow increment issues in prod data from re-iding
#186 opened May 24, 2024 by aclum
@mbthornton-lbl
1
Run process-records on perlmutter for gold:Gs0114663 / nmdc:sty-11-aygzgv51
#178 opened May 17, 2024 by mbthornton-lbl
@mbthornton-lbl
Data QC: workflow_execution_has_input_data_objects
#176 opened May 16, 2024 by mbthornton-lbl
1
update nmdc_automation/workflow_automation/activities.py for berkeley schema
#153 opened May 3, 2024 by aclum
3 tasks
update nmdc_automation/import_automation/activity_mapper.py for Berkeley schema
#152 opened May 3, 2024 by aclum
3 tasks
Update nmdc_automation/configs.import.yaml for Berkeley schema
#151 opened May 3, 2024 by aclum
update nmdc_automation/configs/import.yaml for berkeley schema
#150 opened May 3, 2024 by aclum
Document the scheduler script documentation Improvements or additions to documentation
#146 opened May 2, 2024 by eecavanna
Add support needed for ID mapping enhancement New feature or request
#132 opened Apr 30, 2024 by scanon
3 tasks done
@scanon
update MAGs version for workflow automation
#107 opened Apr 18, 2024 by aclum
@scanon
1
Re-ID task template
#92 opened Apr 16, 2024 by mbthornton-lbl
21 tasks
Update README and code documentation for JGI file staging
#84 opened Apr 9, 2024 by mbthornton-lbl
@mbthornton-lbl
automation support for long read assembly
#82 opened Mar 29, 2024 by aclum
@scanon @kaijli @vlilanl
Fix error in jgi_file_metadata.py
#76 opened Mar 20, 2024 by mbthornton-lbl
@mbthornton-lbl
1
remove all records from read_based_analysis_activity_set
#71 opened Mar 13, 2024 by aclum
Updates to file type enumerations for binning workflow
#67 opened Mar 8, 2024 by aclum
1 of 2 tasks
@scanon @mbthornton-lbl
4
Add dexterity to version picking in scheduler
#62 opened Feb 21, 2024 by Michal-Babins
Test jaws with nmdc_automation integration
#53 opened Feb 7, 2024 by Michal-Babins
@kaijli
Test out JAWs python module with NMDC workflows backlog
#48 opened Feb 1, 2024 by Michal-Babins
@kaijli
3
Update automation logic when metagenome workflow process starts from annotation
#35 opened Dec 21, 2023 by aclum
@scanon @kaijli @mbthornton-lbl
4
Duplicate records with incorrect versioning - NEON backlog
#54 opened Dec 21, 2023 by aclum
1 of 3 tasks
@mbthornton-lbl
12
jgi_file_staging: test data fixtures get ValidationErrors from the Sample model
#33 opened Dec 8, 2023 by mbthornton-lbl
update code that generates metap_gene_function_aggregation
#32 opened Dec 6, 2023 by aclum
2
Add doc strings and config documentation
#28 opened Nov 21, 2023 by scanon
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