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Raw & clean length or coverage in one file #81

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JFsanchezherrero
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Dear developers,
I have just added two simple scripts to generate a Kmer and unitigs coverage plot and unitig length plot using at the same time the raw and clean information provided.

I basically made a function of your code for plotting each individual file and a make a couple of adjustments.

I added two files to the repo and I attach here an example of the plots generated my own data:
scripts/R/plot-covg-hist_raw-clean.R
scripts/R/plot-length-hist_raw-clean.R

Examples:
test-cov.pdf

image

test-len.pdf
image

Please, feel free to modify the code, add them if you feel like or discard them if you don't like them and do not find them useful.

I did if because I found them useful in order to check and plot the quality filtering generated during the proccess in a single file.

Regards,
Jose F. Sanchez-Herrero

@iqbal-lab
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Apologies @JFsanchezherrero that this PR has been ignored. I don't see any reason not to just merge it.

@iqbal-lab
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ah of course i dont have merge rights for this repo

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2 participants