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results/kmer_size_experiment/results/make-csvs-and-plots.sh
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#!/bin/bash | ||
set -eou pipefail | ||
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./make-csv.sh ../perfect_cov/k*/stats.plain.txt > perfect.plain.csv | ||
./make-csv.sh ../perfect_cov/k*/stats.links.txt > perfect.links.csv | ||
./make-csv.sh ../perfect_cov/k*/stats.pe.txt > perfect.pe.csv | ||
./plot-n50-and-errs.R perfect.plain.csv perfect.links.csv perfect.pe.csv "Perfect coverage (100X, 100bp reads)" perfect.cov.pdf | ||
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./make-csv.sh ../stoch_cov/k*/stats.plain.txt > stoch.plain.csv | ||
./make-csv.sh ../stoch_cov/k*/stats.links.txt > stoch.links.csv | ||
./make-csv.sh ../stoch_cov/k*/stats.pe.txt > stoch.pe.csv | ||
./plot-n50-and-errs.R stoch.plain.csv stoch.links.csv stoch.pe.csv "Stochastic coverage (100X, 100bp reads)" stoch.cov.pdf | ||
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./make-csv.sh ../stocherr_cov/k*/stats.plain.txt > stocherr.plain.csv | ||
./make-csv.sh ../stocherr_cov/k*/stats.links.txt > stocherr.links.csv | ||
./make-csv.sh ../stocherr_cov/k*/stats.pe.txt > stocherr.pe.csv | ||
./plot-n50-and-errs.R stocherr.plain.csv stocherr.links.csv stocherr.pe.csv "Stochastic coverage + Error (100X, 100bp reads, 0.5% err)" stocherr.cov.pdf | ||
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./make-cleaning-table.py ../stocherr_cov/k*/graph.k*.dist.txt > cleaning.table.csv |