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maxschelski/README.md

I am a neurobiology PhD Student and currently developing mathematical models of neuronal cell biology - using mean field modeling of systems of partial differential equations and stochastic simulations. By training I am an experimental neurobiologist with more than 16 years of experience in programming.

In the future I would like to develop computational models of neural networks learning through synaptic plasticity that is constrained by neuronal cell biology. I also have a keen interest in AI & machine learning.

Pinned

  1. figureflow figureflow Public

    Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.

    Python 10 1

  2. cytostoch cytostoch Public

    Stochastic simulation (SSA) of cytoskeleton, implemented using CUDA JIT from numba for fast parallel processing on a GPU. Intended for microtubules in neurites, but is much more flexible.

    Python

  3. pytorch-cluster-metrics pytorch-cluster-metrics Public

    Pytorch implementation of standard metrics for clustering

    Python 6

  4. neuritemt neuritemt Public

    Package to analyze microtubule orientation in neurons based on output of utrack/plustiptracker.

    Python

  5. pyneurite pyneurite Public

    A computer vision package that traces and analyzes neurites in time-lapse videos fully automated.

    Python