Version 0.3.0 Release

• Updates the blastdbcmd to use the -outfmt flag which outputs only the fields of interest and doesn't require any FASTA parsing
• Fixes a bug in the calculation of sensitivity and specificity

To install from source, download the attached source tarball and run, e.g.

$ gunzip < chipper-0.2.1.tar.gz | tar -xvf -
$ cd chipper-0.2.1
$ mkdir build
$ cd build
$ cmake ..
$ make all test install

There is also an attached binary distribution for Darwin which has already been built for you as well as all the input and generated data from the jupyter notebook.

Version 0.2.1 Release

This update removes duplicate data from the training set (currently 36 duplicates were found). All data is now written to a versioned directory to make it easier to share with each chipper release.

To install from source, download the attached source tarball and run, e.g.

$ gunzip < chipper-0.2.1.tar.gz | tar -xvf -
$ cd chipper-0.2.1
$ mkdir build
$ cd build
$ cmake ..
$ make all test install

There is also an attached binary distribution for Darwin which has already been built for you as well as all the input and generated data from the jupyter notebook.

Version 0.2.0 release

Version 0.2.0

• Prior code expressed the probability of cleavage of the N-terminus at each position of the peptide. This commit changes the prediction of cleavage at the C-terminus.
• Support for NetChop 3.0 formatted output, both long and short form
• Improved test coverage
• See README for more details

To install from source, download the attached source tarball and run, e.g.

$ gunzip < chipper-0.2.0.tar.gz | tar -xvf -
$ cd chipper-0.2.0
$ mkdir build
$ cd build
$ cmake ..
$ make all test install

There is also an attached binary distribution for Darwin which has already been built for you.