This code belongs to the paper
"An unbiased reconstruction of the T helper cell type 2 differentiation network"
by J. Henriksson et al.

Corresponding author: Sarah Teichmann, st9@sanger.ac.uk

But for technical questions, consider going straight to Johan Henriksson: mahogny@areta.org

The code provided here is not sufficient to reproduce the article from the raw data - too many BASH scripts
and Makefiles are scatted over the EBI cluster, with paths that only make sense in that environment.
However, this code should be more or less complete if count tables are provided

The code is available under the 2-clause BSD license. However, should you find a signicant part useful, please cite our
paper (or add a reference in your code).