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Build fails, is there a singularity? #278

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ESDeutekom opened this issue Mar 4, 2024 · 1 comment
Open

Build fails, is there a singularity? #278

ESDeutekom opened this issue Mar 4, 2024 · 1 comment

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@ESDeutekom
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I cannot install the tool via bioconda, because the recipe is broken. I also cannot build from git, because there are several warning and then the install just fails.

Can you maybe host the docker container on the docker repo? I cannot find it there. It would save many people the headache (as I see form the multiple issues related to this). In that way we do not need to find a way to make a singularity image from a docker file to run it from HPC systems, or to install and update all the dependencies needed to run this tool from git build.

Thank you in advance.

Kind regards,

@ESDeutekom ESDeutekom changed the title Build fails Build fails, is there a singularity? Mar 4, 2024
@ESDeutekom
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there is! For some reason it does not pop up in docker hub search, but for everyone in need: https://luntergroup.github.io/octopus/docs/installation#singularity

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