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  1. BestPracticesST BestPracticesST Public

    'Best Practices for Spatial Transcriptomics Analysis with Bioconductor' online book

    TeX 27 7

  2. locus-c locus-c Public

    Code to reproduce analyses in our paper on the landscape of gene expression in the human locus coeruleus (LC)

    HTML 3

  3. nnSVG nnSVG Public

    nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data

    R 9 7

  4. nnSVG-analyses nnSVG-analyses Public

    Scripts to reproduce analyses and figures in nnSVG paper

    R 2

  5. diffcyt diffcyt Public

    R package for differential discovery analyses in high-dimensional cytometry data

    R 18 12

  6. cytometry-clustering-comparison cytometry-clustering-comparison Public

    R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

    R 43 15