Pinned

1. bioinfologics/sdg bioinfologics/sdg Public

   Sequence Distance Graph framework: graph + reads + mapping + analysis

   C++ 25 6

2. bioinfologics/w2rap-contigger bioinfologics/w2rap-contigger Public

   An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.

   C++ 43 14

3. EI-CoreBioinformatics/mikado EI-CoreBioinformatics/mikado Public

   Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

   Python 87 17

4. fa2tree fa2tree Public

   Generate a PHYLIP file from different sized fasta files, the markers must have the same starting position but the end is not important

   Python

5. gpuMFEM gpuMFEM Public

   Point Based deformable models implementation, single core, multi-core (OpenMP) and GPU (CUDA)

   Cuda 1 1

6. ondaCUDA ondaCUDA Public

   Finite differences wave propagation on the GPU

   C++