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  1. Hyb-Seq_protocol Hyb-Seq_protocol Public

    A protocol for designing probes for targeted sequence capture from the input of genomic and transcriptomic data, and methods for analyzing the resulting sequence data.

    Python 3 5

  2. polymorphic_read_counter_bwaPileup polymorphic_read_counter_bwaPileup Public

    Forked from kweitemier/polymorphic_read_counter_bwaPileup

    Calculates the proportion of reads at a DNA sequence position that differ from the majority.

    Perl

  3. fastq_collapse fastq_collapse Public

    Forked from kweitemier/fastq_collapse

    Discards exact fastq sequence duplicates, preserving the highest average quality score. It also makes a file containing all the duplicated reads.

    Python

  4. POLiMAPS POLiMAPS Public

    Forked from jacobtennessen/POLiMAPS

    Perl scripts for analyzing polyploid DNA sequence data

    Perl 1

  5. utility-scripts utility-scripts Public

    Utility scripts written for the Cronn and Liston labs

    Python 1

  6. Workshops Workshops Public

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