Mitochondrial Long-read Iterative Assembly (MLIA)

Tools

MLIA.sh

The shell scripts of Mitochondrial Long-read Iterative Assembly (MLIA) pipeline

MLIA.smk

Mitochondrial Long-read Iterative Assembly (MLIA) pipeline created by the Snakemake workflow management system.

Requirements

• Linux system
• Canu v2
• minimap2
• seqtk

• If you want to use this script, you will need to substitute all of your own appropriate paths to folders and files.

cite

Ji X, Tian Y, Liu W, Lin C, He F, Yang J, Miao W, Li Z. Mitochondrial characteristics of the powdery mildew genus Erysiphe revealed an extraordinary evolution in protein-coding genes. Int J Biol Macromol. 2023 Mar 1;230:123153. doi: 10.1016/j.ijbiomac.2023.123153. Epub 2023 Jan 5. PMID: 36610569.