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37 Open 292 Closed
37 Open 292 Closed
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Issues list

allelic copy number for segments
#364 opened Apr 13, 2024 by jennyp76
WARN [2024-03-12 11:57:13] Could not find valid purity and ploidy solution. Error in results[[1]] : subscript out of bounds
#358 opened Mar 12, 2024 by gagank4911
Could not find valid purity and ploidy solution
#355 opened Mar 7, 2024 by gagank4911
HRD score from PureCN outputs question
#352 opened Feb 29, 2024 by ShvartsmanIrina
2
Annotation using different database enhancement
#350 opened Feb 8, 2024 by jennyp76
1
GATK segmentation might fail when all variants on a chromosome are filtered out. bug gatk4 All things related to GATK4/Mutect2
#343 opened Jan 16, 2024 by lima1
Support for non-diploid allosome alterations
#342 opened Jan 13, 2024 by lima1
Running PureCN with only one normal samples bug
#341 opened Jan 5, 2024 by sleyn
1
Error with overlapping gaps when running PureCN
#339 opened Dec 19, 2023 by akaviaLab
6
In case this may be of help
#338 opened Dec 15, 2023 by GuidoLeoni
Mutect2 drops MBQ to 20 in overlapped reads gatk4 All things related to GATK4/Mutect2
#320 opened Sep 6, 2023 by sleyn
4
PureCN segmentation and VCF do not overlap
#316 opened Aug 22, 2023 by pavamateo
1
Add heterozygous SNP test for homozygous deletions enhancement
#273 opened Apr 6, 2023 by lima1
Remove copynumber dependency enhancement
#271 opened Mar 24, 2023 by lima1
CRAM compatibility
#244 opened Jun 27, 2022 by Jwong684
1
Improve sensitivity of low purity amplification calling pipeline enhancement
#239 opened May 29, 2022 by lima1
2 tasks
Flag difficult genes in callAmplifications enhancement
#179 opened May 16, 2021 by lima1
Support for homologous recombination deficiency scores in Dx.R enhancement
#159 opened Dec 19, 2020 by lima1
10
Functionality to create segment blacklist enhancement
#130 opened Jul 28, 2020 by lima1
PureCN.pdf filenames enhancement
#113 opened Nov 20, 2019 by tedtoal
1
Improve mapping bias estimates enhancement
#90 opened Jun 11, 2019 by lima1 Bioconductor 3.11 Release
@lima1
Standardizing output plots enhancement
#87 opened May 21, 2019 by lima1
Implement pseudo-tangent normalization enhancement
#77 opened Apr 5, 2019 by lima1 Bioconductor 3.11 Release
Add support for all species with annotation data in Bioconductor enhancement
#76 opened Mar 27, 2019 by lima1
Flag segments when interval weights are low enhancement
#72 opened Feb 16, 2019 by lima1
2 of 3 tasks
Bioconductor 3.10 Release
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