- updated trimadap to r9 for trimming (not only masking)
- updated hapdip to r36 for minor bug fixes
- updated htsbox to r130 for a few minor changes and BAM sorting
- dropped samtools dependency for BAM sorting (now by htsbox)
- added test script (by Mike Lin)
- The assembly components are identical to v0.12.
- The calling pipeline should produce the same variants.