tentative fix: change paths to figures

lgatto · Apr 28, 2023 · dc24e76 · dc24e76
1 parent 047562c
commit dc24e76
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Showing 3 changed files with 10 additions and 6 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -2,7 +2,7 @@ Package: RforProteomics
 Type: Package
 Title: Companion package to the 'Using R and Bioconductor for
     proteomics data analysis' publication
-Version: 1.39.0
+Version: 1.39.1
 Authors@R: c(person("Laurent", "Gatto", role=c("aut", "cre"),
                     email="laurent.gatto@uclouvain.be"),
              person("Sebastian", "Gibb", role="ctb",

diff --git a/NEWS.md b/NEWS.md
@@ -1,8 +1,12 @@
 # RforProteomics 1
 
+## Changes in version 1.39.1
+
+- change paths to figures.
+
 ## Changes in version 1.39.0
 
-- New Bioc devel version
+- New Bioc devel version.
 
 ## Changes in version 1.37.4
 

diff --git a/vignettes/RProtVis.Rmd b/vignettes/RProtVis.Rmd
@@ -604,7 +604,7 @@ saveGIF(an1(), movie.name = "msanim1.gif")
 ```
 
 ```{r, fig.align = "center"}
-knitr::include_graphics("figures/msanim1.gif")
+knitr::include_graphics("./figures/msanim1.gif")
 ```
 
 The code chunk below scrolls of a slice of retention times while
@@ -626,7 +626,7 @@ saveGIF(an2(), movie.name = "msanim2.gif")
 ```
 
 ```{r, fig.align = "center"}
-knitr::include_graphics("figures/msanim2.gif")
+knitr::include_graphics("./figures/msanim2.gif")
 ```
 
 ## The `r Biocpkg("MSnbase")` infrastructure
@@ -826,7 +826,7 @@ par(oldPar)
 ```
 
 ```{r, fig.align = "center"}
-knitr::include_graphics("figures/mqmsi-1.png")
+knitr::include_graphics("./figures/mqmsi-1.png")
 ```
 
 ## An interactive `r CRANpkg("shiny")` app for Imaging mass spectrometry
@@ -841,7 +841,7 @@ runGitHub("sgibb/ims-shiny")
 ```
 
 ```{r, fig.align = "center"}
-knitr::include_graphics("figures/ims-shiny.png")
+knitr::include_graphics("./figures/ims-shiny.png")
 ```
 
 # Spatial proteomics