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derfinderHelper

Lifecycle: stable Bioc release status Bioc devel status Bioc downloads rank Bioc support Bioc history Bioc last commit Bioc dependencies Codecov test coverage R build status GitHub issues GitHub pulls

Helper package for derfinder.

Documentation

For more information about derfinderHelper check the vignettes through Bioconductor or at the documentation website.

Installation instructions

Get the latest stable R release from CRAN. Then install derfinderHelper from Bioconductor using the following code:

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}

BiocManager::install("derfinderHelper")

Citation

Below is the citation output from using citation('derfinderHelper') in R. Please run this yourself to check for any updates on how to cite derfinderHelper.

print(citation("derfinderHelper"), bibtex = TRUE)
#> To cite package 'derfinderHelper' in publications use:
#> 
#>   Collado-Torres L, Jaffe AE, Leek JT (2017). _derfinderHelper:
#>   derfinder helper package_. doi:10.18129/B9.bioc.derfinderHelper
#>   <https://doi.org/10.18129/B9.bioc.derfinderHelper>,
#>   https://github.com/leekgroup/derfinderHelper - R package version
#>   1.35.0, <http://www.bioconductor.org/packages/derfinderHelper>.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Manual{,
#>     title = {derfinderHelper: derfinder helper package},
#>     author = {Leonardo Collado-Torres and Andrew E. Jaffe and Jeffrey T. Leek},
#>     year = {2017},
#>     url = {http://www.bioconductor.org/packages/derfinderHelper},
#>     note = {https://github.com/leekgroup/derfinderHelper - R package version 1.35.0},
#>     doi = {10.18129/B9.bioc.derfinderHelper},
#>   }
#> 
#>   Collado-Torres L, Nellore A, Frazee AC, Wilks C, Love MI, Langmead B,
#>   Irizarry RA, Leek JT, Jaffe AE (2017). "Flexible expressed region
#>   analysis for RNA-seq with derfinder." _Nucl. Acids Res._.
#>   doi:10.1093/nar/gkw852 <https://doi.org/10.1093/nar/gkw852>,
#>   <http://nar.oxfordjournals.org/content/early/2016/09/29/nar.gkw852>.
#> 
#> A BibTeX entry for LaTeX users is
#> 
#>   @Article{,
#>     title = {Flexible expressed region analysis for RNA-seq with derfinder},
#>     author = {Leonardo Collado-Torres and Abhinav Nellore and Alyssa C. Frazee and Christopher Wilks and Michael I. Love and Ben Langmead and Rafael A. Irizarry and Jeffrey T. Leek and Andrew E. Jaffe},
#>     year = {2017},
#>     journal = {Nucl. Acids Res.},
#>     doi = {10.1093/nar/gkw852},
#>     url = {http://nar.oxfordjournals.org/content/early/2016/09/29/nar.gkw852},
#>   }

Please note that the derfinderHelper was only made possible thanks to many other R and bioinformatics software authors, which are cited either in the vignettes and/or the paper(s) describing this package.

Code of Conduct

Please note that the derfinderHelper project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

Development tools

For more details, check the dev directory.