Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add spatial obsm to adata on MCMICRO loading #66

Open
wants to merge 1 commit into
base: master
Choose a base branch
from

Conversation

adamjtaylor
Copy link

This PR adds the spatial OBSM to the data object created by the sm.pp.mcmicro_to_scimap function, pulling coordinates from X_centroid and Y_centroid.

This allows for scanpy visualizations such as sc.pl.embedding(adata, basis = 'spatial', color = 'leiden') to be run natively.

image

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant