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Knight Lab Analyses

Software used for analysis in various Knight Lab projects

24 followers
La Jolla, California
http://knightlab.ucsd.edu

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knight-docs knight-docs Public

General Knight Lab documentation and reference cards

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Showing 10 of 66 repositories

dynamics Public
Analysis of Multiple Circadian/Longitudinal Datasets

Jupyter Notebook 0 BSD-2-Clause 0 0 0 Updated Feb 23, 2024
marmoset-diet-change Public
Shotgun metagenomic analysis of laboratory-house common marmoset breeding colony that switched from pelleted to gel diet

Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jan 17, 2024
birdman-analyses Public

Jupyter Notebook 5 1 0 0 Updated Dec 30, 2023
uc-severity-multiomics Public

Jupyter Notebook 4 BSD-3-Clause 5 1 0 Updated Jul 25, 2023
greengenes2 Public

Python 1 BSD-3-Clause 0 0 0 Updated May 1, 2023
imsms-ml Public
Data exploration and analysis scripts for the machine learning analysis of the iMSMS collaboration.

Python 2 0 0 0 Updated Mar 16, 2023
mycobiome Public
Pan-cancer mycobiome atlas

Jupyter Notebook 19 14 0 0 Updated Oct 7, 2022
evident-analyses Public

Jupyter Notebook 2 1 0 0 Updated Jul 11, 2022
version-testing-fastp-minimap2 Public
version-testing for fastp-minimap2

Python 0 BSD-3-Clause 3 0 0 Updated Apr 15, 2022
unifrac-colab-notebooks Public
Notebooks for use on Google Colabs

Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Apr 1, 2022

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