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Caldera ๐ŸŒ‹

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PLEASE NOTE PROJECT HAS MOVED TO Caldera2

Caldera is a Pytorch extension for learning on graphical data. It learns underlying causal relationships in data.

Gallery

Usage

Installation

via pip

via Conda

via Docker

Build CUDA enable image

docker build . -f docker/cu101/Dockerfile

Build slim cpu-only image

docker build . -f docker/cpu/Dockerfile

Tour

Acknowledgements

  • rusty1s/pytorch_scatter - an awesome library that provides missing scatter methods in pytorch. Necessary for graph attribute aggregation
  • PyTorch Geometric -
  • PGN - provided a blueprint for implementing this library

References

Inspirations

  • Pytorch Geometric [ADD REF]
  • GraphNets [ADD REF]
  • Pyro Probabilistic Programming Language
  • Pearl, J. (2009). Causality: Models, Reasoning and Inference.
  • Pearl, J. (2018). Theoretical impediments to machine learning with seven sparks from the causal revolution.

About

๐ŸŒ‹ Pytorch extension for training on biological network data (ARCHIVED)

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