MatlabNeuralDataPipeline

This repo contains the pipeline for Matlab neural data analysis. This repo aims to include all neural data analysis codes in applicable/generalizable forms. Please see, the associated github repository, https://github.com/jup36/MatlabNeuralDataPipeline.git

Name		Name	Last commit message	Last commit date
Latest commit History 165 Commits
Anxiety_goal_directed_behavior		Anxiety_goal_directed_behavior
BehaviorCode		BehaviorCode
Classifier		Classifier
ExperimentalCodes		ExperimentalCodes
External_codes		External_codes
KalmanFilterAnalysis		KalmanFilterAnalysis
MATLAB-SDK		MATLAB-SDK
MIMT		MIMT
ML_utils		ML_utils
NP_evaluation_tools		NP_evaluation_tools
NeuralPopTrajectory		NeuralPopTrajectory
Neural_signal_processing_BY		Neural_signal_processing_BY
Neuropixels_evaluation_tools		Neuropixels_evaluation_tools
PlotCode		PlotCode
SpikePreprocessing		SpikePreprocessing
Spikesorting_auxiliary		Spikesorting_auxiliary
Stats		Stats
TONIC-master		TONIC-master
cbrewer		cbrewer
chronux		chronux
color		color
dca-master		dca-master
fit_ellipse		fit_ellipse
gramm		gramm
js2.0_Beh		js2.0_Beh
js2p0_collectCode		js2p0_collectCode
js2p0_dPrime		js2p0_dPrime
mesomapping		mesomapping
myfisher		myfisher
natsortfiles_test		natsortfiles_test
nbc		nbc
neural_encoding_trial_types_js2p0		neural_encoding_trial_types_js2p0
nnDecodingAnlaysis		nnDecodingAnlaysis
npy-matlab		npy-matlab
plots		plots
pyrenn-master		pyrenn-master
reachPull_glm		reachPull_glm
ridgeModel-master		ridgeModel-master
targeted_dimensionality_reduction		targeted_dimensionality_reduction
test_glm		test_glm
tightfig		tightfig
trjDecoder		trjDecoder
videoHandTrajAnalysis		videoHandTrajAnalysis
.DS_Store		.DS_Store
ColumnwiseProductTwoMatrices.m		ColumnwiseProductTwoMatrices.m
IndividualUnitPlotGramm.m		IndividualUnitPlotGramm.m
Mahalanobis_distance.m		Mahalanobis_distance.m
PSTH_rastersNidq.m		PSTH_rastersNidq.m
README.md		README.md
XY_with_gramm.m		XY_with_gramm.m
absMaxTimeSortPsth.m		absMaxTimeSortPsth.m
absMaxTimeSortPsthNeg.m		absMaxTimeSortPsthNeg.m
angleTwoVecRad.m		angleTwoVecRad.m
angleTwoVectors.m		angleTwoVectors.m
arrowh.m		arrowh.m
baseSubNorm.m		baseSubNorm.m
binTimeSeries.m		binTimeSeries.m
blockMeanPlot.m		blockMeanPlot.m
blockwiseAvgPlot.m		blockwiseAvgPlot.m
boundedline.m		boundedline.m
cellWithNonEmptyColumns.m		cellWithNonEmptyColumns.m
chi2cont.m		chi2cont.m
colorGradient.m		colorGradient.m
combineCellsIntoCell.m		combineCellsIntoCell.m
computeReachAngle.m		computeReachAngle.m
crossValidationFolds.m		crossValidationFolds.m
crosscorrelationjit.m		crosscorrelationjit.m
crosstabfun.m		crosstabfun.m
crossvaltrials.m		crossvaltrials.m
denoiseByTemplateSubtraction.m		denoiseByTemplateSubtraction.m
dirsub.m		dirsub.m
divideTrials.m		divideTrials.m
eventpsdAGB.m		eventpsdAGB.m
extm.m		extm.m
extractNameFromPath.m		extractNameFromPath.m
filledCircle.m		filledCircle.m
filter1.m		filter1.m
findAsManyFilesWithString.m		findAsManyFilesWithString.m
findFileWithString.m		findFileWithString.m
findFolderWithString.m		findFolderWithString.m
findFoldersWithString.m		findFoldersWithString.m
fit_ellipse.zip		fit_ellipse.zip
fitrm_ranova_multcompare.m		fitrm_ranova_multcompare.m
flatCell.m		flatCell.m
flattenNestCellArray.m		flattenNestCellArray.m
generateColormap.m		generateColormap.m
getBehVariablesJs.m		getBehVariablesJs.m
getHH2AcuteGeom.m		getHH2AcuteGeom.m
getUnitOfHighXcorr.m		getUnitOfHighXcorr.m
getcsvfile.m		getcsvfile.m
getimec3opt3geom.m		getimec3opt3geom.m
getjrcmat.m		getjrcmat.m
getjrcmatVar.m		getjrcmatVar.m
getmeta.m		getmeta.m
getmetaImec.m		getmetaImec.m
getmetaNidq.m		getmetaNidq.m
hh2DuoGeometry.mat		hh2DuoGeometry.mat
hotcolormap.mat		hotcolormap.mat
imagescJP.m		imagescJP.m
imagescWithSmoothing.m		imagescWithSmoothing.m

License

jup36/MatlabNeuralDataPipeline

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