Fix default for "is_single_end" function

juliema · May 25, 2021 · 02ba25e · 02ba25e
1 parent ff56563
commit 02ba25e
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/lib/blast.py b/lib/blast.py
@@ -108,8 +108,7 @@ def get_raw_hits(log, json_file):
                    'You may need to upgrade blast.')
             log.fatal(err)
 
-    return obj['BlastOutput2'][0]['report']['results']['search'].get(
-        'hits', [])
+    return obj['BlastOutput2'][0]['report']['results']['search'].get('hits', [])
 
 
 def hits(log, json_file):

diff --git a/lib/db.py b/lib/db.py
@@ -103,7 +103,7 @@ def get_version(cxn):
 
 def is_single_end(cxn):
     """Was the database build for single ends."""
-    result = get_metadata(cxn, 'single_ends')
+    result = get_metadata(cxn, 'single_ends', default='0')
     return result != '0'