Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add github action to shellcheck master on push and PRs #340

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Add github action to shellcheck master on push and PRs #340

wants to merge 1 commit into from

Conversation

yarikoptic
Copy link

ATM this one identifies lots of warnings and one likely error

In installer/docker/check_x_port.sh line 3:
[[ DISPLAY ]] || {
   ^-----^ SC2078 (error): This expression is constant. Did you forget a $ somewhere?

which you might like to address, but instead of an issue decided to file a PR right away

warnings to be addressed -- should be also shown in the action outputs which should now fail 
In hnn.sh line 31:
then python3 hnn.py -paramf $paramf -dataf $dataf
                            ^-----^ SC2086 (info): Double quote to prevent globbing and word splitting.
                                           ^----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
then python3 hnn.py -paramf "$paramf" -dataf "$dataf"


In hnn.sh line 33:
then python3 hnn.py -paramf $paramf
                            ^-----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
then python3 hnn.py -paramf "$paramf"


In hnn.sh line 35:
then python3 hnn.py -dataf $dataf
                           ^----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
then python3 hnn.py -dataf "$dataf"


In hnn_docker.sh line 16:
  echo "Error: ${BASH_SOURCE[0]} (L:$BASH_LINENO) expects UID to be set" >> "$LOGFILE"
                                    ^----------^ SC2128 (warning): Expanding an array without an index only gives the first element.


In hnn_docker.sh line 20:
[[ $LOGFILE ]] || export LOGFILE="$(pwd)/hnn_docker.log"
                         ^-----^ SC2155 (warning): Declare and assign separately to avoid masking return values.


In hnn_docker.sh line 21:
source scripts/docker_functions.sh
       ^-------------------------^ SC1091 (info): Not following: scripts/docker_functions.sh was not specified as input (see shellcheck -x).


In hnn_docker.sh line 24:
if [[ $? -ne 0 ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 63:
if  [[ ! -z "${DOCKER_MACHINE_NAME}" ]]; then
       ^-- SC2236 (style): Use -n instead of ! -z.


In hnn_docker.sh line 73:
if [[ $? -ne "0" ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 76:
  if [[ $? -eq 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In hnn_docker.sh line 80:
    eval $("${docker_machine}" env -u 2> /dev/null)
         ^-- SC2046 (warning): Quote this to prevent word splitting.
            ^---------------^ SC2154 (warning): docker_machine is referenced but not assigned.


In hnn_docker.sh line 81:
    eval $("${docker_machine}" env 2> /dev/null)
         ^-- SC2046 (warning): Quote this to prevent word splitting.


In hnn_docker.sh line 84:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 93:
if [[ $? -ne "0" ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 100:
  if [[ $? -ne 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 120:
  if [[ $? -eq "0" ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In hnn_docker.sh line 131:
    read -p "Are you sure that you want to remove the HNN image? (y/n)" yn
    ^--^ SC2162 (info): read without -r will mangle backslashes.


In hnn_docker.sh line 151:
  if [[ $? -ne 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 153:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 164:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 170:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 179:
  if [[ $? -ne 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 188:
  if [[ $? -ne "0" ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 194:
        if [[ $? -ne "0" ]]; then
              ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 206:
  if [[ $? -ne "0" ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 212:
if [[ $? -ne 0 ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 213:
  NEW_XAUTH_KEYS=1
  ^------------^ SC2034 (warning): NEW_XAUTH_KEYS appears unused. Verify use (or export if used externally).


In hnn_docker.sh line 220:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 229:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 238:
KEYS_TO_CONVERT=$(echo "$(get_host_xauth_keys)" | grep -v '^ffff')  # we know get_xauth_keys will succeed after above
                       ^----------------------^ SC2005 (style): Useless echo? Instead of 'echo $(cmd)', just use 'cmd'.


In hnn_docker.sh line 242:
  echo -e "\n  ** Command: \"${xauth_cmd}\" nlist $DISPLAY | sed -e 's/^..../ffff/' | \"${xauth_cmd}\" -f \"$XAUTHORITY\" -b -i nmerge -" >> "$LOGFILE"
  ^-- SC2129 (style): Consider using { cmd1; cmd2; } >> file instead of individual redirects.


In hnn_docker.sh line 245:
  if [[ "$?" -ne "0" ]] || [[ -f "${XAUTHORITY}-n" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 256:
  if [[ $? -ne "0" ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 262:
if [[ $? -ne "0" ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 272:
if [[ $? -eq "0" ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In hnn_docker.sh line 276:
  if [[ $? -eq "0" ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In hnn_docker.sh line 284:
    if [[ $? -eq 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In hnn_docker.sh line 290:
        if [[ $? -eq "0" ]]; then
              ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In hnn_docker.sh line 326:
if [[ $? -ne 0 ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 343:
  if [[ $? -ne 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 357:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 366:
  if [[ $? -ne 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In hnn_docker.sh line 370:
    RETRY=1
    ^---^ SC2034 (warning): RETRY appears unused. Verify use (or export if used externally).


In hnn_docker.sh line 374:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In installer/aws/aws-build.sh line 25:
cd $HOME && \
   ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
cd "$HOME" && \


In installer/aws/aws-build.sh line 27:
  cd hnn
  ^----^ SC2164 (warning): Use 'cd ... || exit' or 'cd ... || return' in case cd fails.

Did you mean: 
  cd hnn || exit


In installer/aws/aws-build.sh line 30:
echo 'cd $HOME/hnn' | sudo tee -a /usr/local/bin/hnn
     ^------------^ SC2016 (info): Expressions don't expand in single quotes, use double quotes for that.


In installer/brown_ccv/oscar_setup.sh line 5:
mkdir -p $HOME/HNN
         ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
mkdir -p "$HOME"/HNN


In installer/brown_ccv/oscar_setup.sh line 8:
cd $HOME/HNN
^----------^ SC2164 (warning): Use 'cd ... || exit' or 'cd ... || return' in case cd fails.
   ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
cd "$HOME"/HNN || exit


In installer/brown_ccv/oscar_setup.sh line 15:
cd $HOME/HNN/hnn && \
   ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
cd "$HOME"/HNN/hnn && \


In installer/brown_ccv/oscar_setup.sh line 20:
cat <<EOF | tee -a $HOME/.bash_profile > /dev/null
                   ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
cat <<EOF | tee -a "$HOME"/.bash_profile > /dev/null


In installer/brown_ccv/oscar_setup.sh line 39:
cd $HOME/HNN/hnn
^--------------^ SC2164 (warning): Use 'cd ... || exit' or 'cd ... || return' in case cd fails.
   ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
cd "$HOME"/HNN/hnn || exit


In installer/centos/hnn-centos7.sh line 18:
echo $startdir
     ^-------^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
echo "$startdir"


In installer/centos/hnn-centos7.sh line 25:
cd $startdir && \
   ^-------^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
cd "$startdir" && \


In installer/centos/hnn-centos7.sh line 31:
    mkdir -p $HOME/.local/share/icons && \
             ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    mkdir -p "$HOME"/.local/share/icons && \


In installer/centos/hnn-centos7.sh line 32:
    cp -f hnn.png $HOME/.local/share/icons/ && \
                  ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    cp -f hnn.png "$HOME"/.local/share/icons/ && \


In installer/centos/hnn-centos7.sh line 33:
    cp -f hnn.desktop $HOME/Desktop && \
                      ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    cp -f hnn.desktop "$HOME"/Desktop && \


In installer/centos/hnn-centos7.sh line 34:
    sed -i "s~/home/hnn_user~$startdir~g" $HOME/Desktop/hnn.desktop && \
                                          ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    sed -i "s~/home/hnn_user~$startdir~g" "$HOME"/Desktop/hnn.desktop && \


In installer/centos/hnn-centos7.sh line 35:
    chmod +x $HOME/Desktop/hnn.desktop
             ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    chmod +x "$HOME"/Desktop/hnn.desktop


In installer/docker/check_hnn_out_perms.sh line 15:
  if [[ $? -ne 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In installer/docker/check_sshd_port.sh line 4:
if [[ $? -ne 0 ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In installer/docker/check_x_port.sh line 3:
[[ DISPLAY ]] || {
   ^-----^ SC2078 (error): This expression is constant. Did you forget a $ somewhere?


In installer/docker/check_x_port.sh line 8:
let PORT=6000+${DISPLAY#*:}
^-------------------------^ SC2219 (style): Instead of 'let expr', prefer (( expr )) .


In installer/docker/check_x_port.sh line 10:
if [ ! -z $IP ]; then
     ^-- SC2236 (style): Use -n instead of ! -z.
          ^-^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
if [ ! -z "$IP" ]; then


In installer/docker/check_x_port.sh line 11:
  nc -zvw3 $IP $PORT
           ^-^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
  nc -zvw3 "$IP" $PORT


In installer/docker/check_x_port.sh line 12:
  if [[ $? -ne 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In installer/docker/hooks/build line 4:
  --build-arg SOURCE_BRANCH=$SOURCE_BRANCH \
                            ^------------^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
  --build-arg SOURCE_BRANCH="$SOURCE_BRANCH" \


In installer/docker/hooks/build line 5:
  --build-arg VCS_TAG=`git describe --tags --abbrev=0` \
                      ^-- SC2046 (warning): Quote this to prevent word splitting.
                      ^-- SC2006 (style): Use $(...) notation instead of legacy backticks `...`.

Did you mean: 
  --build-arg VCS_TAG=$(git describe --tags --abbrev=0) \


In installer/docker/hooks/build line 6:
  --build-arg VCS_REF=`git rev-parse --short HEAD` \
                      ^--------------------------^ SC2046 (warning): Quote this to prevent word splitting.
                      ^--------------------------^ SC2006 (style): Use $(...) notation instead of legacy backticks `...`.

Did you mean: 
  --build-arg VCS_REF=$(git rev-parse --short HEAD) \


In installer/docker/hooks/build line 7:
  --build-arg BUILD_DATE=`date -u +"%Y-%m-%dT%H:%M:%SZ"` \
                         ^-----------------------------^ SC2046 (warning): Quote this to prevent word splitting.
                         ^-----------------------------^ SC2006 (style): Use $(...) notation instead of legacy backticks `...`.

Did you mean: 
  --build-arg BUILD_DATE=$(date -u +"%Y-%m-%dT%H:%M:%SZ") \


In installer/docker/hooks/build line 8:
  -t $IMAGE_NAME .
     ^---------^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
  -t "$IMAGE_NAME" .


In installer/docker/start_hnn.sh line 17:
source "$HOME/hnn_envs"
       ^--------------^ SC1091 (info): Not following: ./hnn_envs was not specified as input (see shellcheck -x).


In installer/docker/start_hnn.sh line 18:
cd "$HOME/hnn_source_code"
^------------------------^ SC2164 (warning): Use 'cd ... || exit' or 'cd ... || return' in case cd fails.

Did you mean: 
cd "$HOME/hnn_source_code" || exit


In installer/docker/start_hnn.sh line 27:
    if [[ $? -eq 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/docker/start_hnn.sh line 31:
      if [[ $? -eq 0 ]]; then
            ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/docker/start_hnn.sh line 43:
if [[ $? -eq 0 ]]; then
      ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/docker/start_hnn.sh line 49:
    if [[ $? -ne 0 ]]; then
          ^-- SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In installer/docker/start_hnn.sh line 61:
  if [[ $? -eq 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/docker/start_hnn.sh line 65:
    let __port=6000+${DISPLAY#*:}
    ^---------------------------^ SC2219 (style): Instead of 'let expr', prefer (( expr )) .


In installer/docker/start_hnn.sh line 67:
    if [ ! -z $__ip ]; then
         ^-- SC2236 (style): Use -n instead of ! -z.
              ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    if [ ! -z "$__ip" ]; then


In installer/docker/start_hnn.sh line 68:
      if nc -zvw3 $__ip $__port > /dev/null 2>&1; then
                  ^---^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
      if nc -zvw3 "$__ip" $__port > /dev/null 2>&1; then


In installer/docker/start_hnn.sh line 79:
  if [[ $? -eq 0 ]]; then
        ^-- SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/docker/start_hnn.sh line 84:
  if [[ "$?" -ne "0" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In installer/docker/start_hnn.sh line 101:
  source activate hnn
         ^------^ SC1091 (info): Not following: activate was not specified as input (see shellcheck -x).


In installer/docker/start_ssh.sh line 14:
if [[ "$DEBUG" = "1" ]]; then
       ^----^ SC2153 (info): Possible misspelling: DEBUG may not be assigned. Did you mean debug?


In installer/mac/check-post.sh line 14:
    SPLITVER=( ${VERSION_STRING//./ } )
               ^--------------------^ SC2206 (warning): Quote to prevent word splitting/globbing, or split robustly with mapfile or read -a.


In installer/mac/check-post.sh line 62:
if [[ "$?" -eq "0" ]]; then
      ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 64:
  MINICONDA_FOUND=1
  ^-------------^ SC2034 (warning): MINICONDA_FOUND appears unused. Verify use (or export if used externally).


In installer/mac/check-post.sh line 75:
  if [[ "$?" -eq "0" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 78:
    if [[ "$?" -eq "0" ]]; then
          ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 109:
if [[ "$?" -eq "0" ]]; then
      ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 117:
elif [[ "PATH" =~ "NEURON" ]] || [[ "$PATH" =~ "NRN" ]]; then
               ^-- SC2050 (warning): This expression is constant. Did you forget the $ on a variable?


In installer/mac/check-post.sh line 130:
if [[ "$?" -ne "0" ]]; then
      ^--^ SC2181 (style): Check exit code directly with e.g. 'if ! mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 169:
  if [[ "$?" -eq "0" ]] && [[ "$OUTPUT" =~ "hello" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 176:
    echo $OUTPUT
         ^-----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    echo "$OUTPUT"


In installer/mac/check-post.sh line 188:
  if [[ "$?" -eq "0" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 196:
    echo $OUTPUT
         ^-----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    echo "$OUTPUT"


In installer/mac/check-post.sh line 208:
  if [[ "$?" -eq "0" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 224:
  if [[ "$?" -eq "0" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 226:
    NRNIV_AND_PYTHON_WORKS=1
    ^--------------------^ SC2034 (warning): NRNIV_AND_PYTHON_WORKS appears unused. Verify use (or export if used externally).


In installer/mac/check-post.sh line 232:
    echo $OUTPUT
         ^-----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    echo "$OUTPUT"


In installer/mac/check-post.sh line 241:
source ${CONDA_PREFIX}/etc/conda/activate.d/env_vars.sh > /dev/null 2>&1
       ^-- SC1091 (info): Not following: ./etc/conda/activate.d/env_vars.sh was not specified as input (see shellcheck -x).
       ^-------------^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
source "${CONDA_PREFIX}"/etc/conda/activate.d/env_vars.sh > /dev/null 2>&1


In installer/mac/check-post.sh line 242:
if [[ "$?" -eq "0" ]] && [[ -n "${LD_LIBRARY_PATH}" ]]; then
      ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 256:
  if [[ "$?" -eq "0" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 263:
    if [[ "$?" -eq "0" ]]; then
          ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 277:
      echo $OUTPUT
           ^-----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
      echo "$OUTPUT"


In installer/mac/check-post.sh line 293:
 if [[ "$?" -eq "0" ]]; then
       ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-post.sh line 295:
   NRNIV_AND_PYTHON_AND_MPI_WORKS=1
   ^----------------------------^ SC2034 (warning): NRNIV_AND_PYTHON_AND_MPI_WORKS appears unused. Verify use (or export if used externally).


In installer/mac/check-post.sh line 301:
   echo $OUTPUT
        ^-----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
   echo "$OUTPUT"


In installer/mac/check-pre.sh line 6:
[[ $1 ]] && VERBOSE=1
            ^-----^ SC2034 (warning): VERBOSE appears unused. Verify use (or export if used externally).


In installer/mac/check-pre.sh line 19:
    SPLITVER=( ${VERSION_STRING//./ } )
               ^--------------------^ SC2206 (warning): Quote to prevent word splitting/globbing, or split robustly with mapfile or read -a.


In installer/mac/check-pre.sh line 38:
  if [[ "$?" -eq "0" ]]; then
        ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-pre.sh line 41:
    if [[ "$?" -eq "0" ]]; then
          ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-pre.sh line 59:
    echo "Existing version ${PYTHON_VERSION} ($(which $PYTHON)) is not compatible with HNN."
                                                      ^-----^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
    echo "Existing version ${PYTHON_VERSION} ($(which "$PYTHON")) is not compatible with HNN."


In installer/mac/check-pre.sh line 60:
    echo "HNN requires at least Python ${PYTHON_REQ_MAJ}.${PYTHON_REQ_MIN}"
                                                         ^---------------^ SC2153 (info): Possible misspelling: PYTHON_REQ_MIN may not be assigned. Did you mean PYTHON_REQ_MAJ?


In installer/mac/check-pre.sh line 74:
if [[ "$?" -eq "0" ]]; then
      ^--^ SC2181 (style): Check exit code directly with e.g. 'if mycmd;', not indirectly with $?.


In installer/mac/check-pre.sh line 80:
elif [[ "PATH" =~ "NEURON" ]] || [[ "$PATH" =~ "NRN" ]]; then
               ^-- SC2050 (warning): This expression is constant. Did you forget the $ on a variable?


In installer/ubuntu/hnn-ubuntu.sh line 9:
  let __retries=5
  ^-------------^ SC2219 (style): Instead of 'let expr', prefer (( expr )) .


In installer/ubuntu/hnn-ubuntu.sh line 22:
  wait $1 && {
       ^-- SC2086 (info): Double quote to prevent globbing and word splitting.
          ^-- SC2015 (info): Note that A && B || C is not if-then-else. C may run when A is true.

Did you mean: 
  wait "$1" && {


In installer/ubuntu/hnn-ubuntu.sh line 64:
sudo -E apt-get update &>> "$LOGFILE"
                        ^-- SC2024 (warning): sudo doesn't affect redirects. Use .. | sudo tee -a file


In installer/ubuntu/hnn-ubuntu.sh line 67:
if [[ "${PYTHON_VERSION}" =~ "3.7" ]] && [[ "$DISTRIB" =~ "bionic" ]]; then
                             ^---^ SC2076 (warning): Remove quotes from right-hand side of =~ to match as a regex rather than literally.


In installer/ubuntu/hnn-ubuntu.sh line 68:
  sudo -E apt-get install --no-install-recommends -y python3.7 python3-pip python3.7-tk python3.7-dev &>> "$LOGFILE" && \
                                                                                                       ^-- SC2024 (warning): sudo doesn't affect redirects. Use .. | sudo tee -a file


In installer/ubuntu/hnn-ubuntu.sh line 69:
    sudo python3.7 -m pip install --upgrade pip setuptools &>> "$LOGFILE"
                                                            ^-- SC2024 (warning): sudo doesn't affect redirects. Use .. | sudo tee -a file


In installer/ubuntu/hnn-ubuntu.sh line 73:
  sudo -E apt-get install --no-install-recommends -y python3 python3-pip python3-tk python3-setuptools &>> "$LOGFILE" && \
                                                                                                        ^-- SC2024 (warning): sudo doesn't affect redirects. Use .. | sudo tee -a file


In installer/ubuntu/hnn-ubuntu.sh line 74:
    sudo pip3 install --upgrade pip &>> "$LOGFILE"
                                     ^-- SC2024 (warning): sudo doesn't affect redirects. Use .. | sudo tee -a file


In installer/ubuntu/hnn-ubuntu.sh line 78:
  export PYTHON=$(which python3)
         ^----^ SC2155 (warning): Declare and assign separately to avoid masking return values.


In installer/ubuntu/hnn-ubuntu.sh line 85:
  export PYTHON=$(which python)
         ^----^ SC2155 (warning): Declare and assign separately to avoid masking return values.


In installer/ubuntu/hnn-ubuntu.sh line 93:
        make gcc g++ python3-dev &>> "$LOGFILE"
                                  ^-- SC2024 (warning): sudo doesn't affect redirects. Use .. | sudo tee -a file


In installer/ubuntu/hnn-ubuntu.sh line 100:
  echo 'export PATH="$PATH:$HOME/.local/bin"' >> ~/.bashrc
       ^-- SC2016 (info): Expressions don't expand in single quotes, use double quotes for that.


In installer/ubuntu/hnn-ubuntu.sh line 163:
        libxcb-xinerama0 libxcb-xfixes0 &>> "$LOGFILE"
                                         ^-- SC2024 (warning): sudo doesn't affect redirects. Use .. | sudo tee -a file


In installer/ubuntu/hnn-ubuntu.sh line 167:
sudo -E apt-get clean &>> "$LOGFILE"
                       ^-- SC2024 (warning): sudo doesn't affect redirects. Use .. | sudo tee -a file


In scripts/setup-travis-linux.sh line 7:
Xvfb $DISPLAY -listen tcp -screen 0 1024x768x24 > /dev/null &
     ^------^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
Xvfb "$DISPLAY" -listen tcp -screen 0 1024x768x24 > /dev/null &


In scripts/setup-travis-linux.sh line 13:
xset -display $DISPLAY -q > /dev/null;
              ^------^ SC2086 (info): Double quote to prevent globbing and word splitting.

Did you mean: 
xset -display "$DISPLAY" -q > /dev/null;


In scripts/setup-travis-osx.sh line 7:
source "$DIR/utils.sh"
       ^-------------^ SC1091 (info): Not following: ./utils.sh was not specified as input (see shellcheck -x).


In scripts/setup-travis-osx.sh line 15:
source "$HOME/Miniconda3/etc/profile.d/conda.sh"
       ^-- SC1091 (info): Not following: ./Miniconda3/etc/profile.d/conda.sh was not specified as input (see shellcheck -x).


In scripts/setup-travis-windows.sh line 17:
reg add HKEY_LOCAL_MACHINE\\SYSTEM\\CurrentControlSet\\Control\\Lsa //t REG_DWORD //v LimitBlankPasswordUse //d 0 //f 2>&1 > /dev/null
                                                                                                                      ^--^ SC2069 (warning): To redirect stdout+stderr, 2>&1 must be last (or use '{ cmd > file; } 2>&1' to clarify).


In scripts/setup-travis-wsl.sh line 7:
source "$DIR/utils.sh"
       ^-------------^ SC1091 (info): Not following: ./utils.sh was not specified as input (see shellcheck -x).

For more information:
  https://www.shellcheck.net/wiki/SC2078 -- This expression is constant. Did ...
  https://www.shellcheck.net/wiki/SC2024 -- sudo doesn't affect redirects. Us...
  https://www.shellcheck.net/wiki/SC2034 -- MINICONDA_FOUND appears unused. V...

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

None yet
1 participant
@yarikoptic