Adherence to Frequency of Turnings Protocol in Mechanically Ventilated Patients in MIMIC-IV

Requirements

1. Access to MIMIC-IV. Learn more here.
2. Project ID of a Google Project, make sure to have the necessary IAM permissions to run queries on Big Query.

Important Note: The google account enabled to access the MIMIC-IV must the be same as the one associated with the Google Project.

Installation

1. run pip install "git+https://github.com/jhn-nt/dpsdc.git"
2. to test the installation, run python3 -m unittest dpsdc.tests

Run the experiment

2. dry run, completed in a couple of minutes: python3 -m dpsdc -p <your project-id> --dry
3. to run the whole experiment (ca 2 hours), use: python3 -m dpsdc -p <your project-id>

Acknowledgements

1. Johnson, Alistair, et al. "Mimic-iv." PhysioNet. Available online at: https://physionet. org/content/mimiciv/1.0/(accessed August 23, 2021) (2020).

2. Yarnell, Christopher J., Alistair Johnson, Tariq Dam, Annemijn Jonkman, Kuan Liu, Hannah Wunsch, Laurent Brochard, et al. 2023. “Do Thresholds for Invasive Ventilation in Hypoxemic Respiratory Failure Exist? A Cohort Study.” American Journal of Respiratory and Critical Care Medicine 207 (3): 271–82.

3. Wong, An-Kwok Ian, et al. "Analysis of discrepancies between pulse oximetry and arterial oxygen saturation measurements by race and ethnicity and association with organ dysfunction and mortality." JAMA network open 4.11 (2021): e2131674-e2131674.

4. Magesh, Shruti, Daniel John, Wei Tse Li, Yuxiang Li, Aidan Mattingly-App, Sharad Jain, Eric Y. Chang, and Weg M. Ongkeko. 2021. “Disparities in COVID-19 Outcomes by Race, Ethnicity, and Socioeconomic Status: A Systematic-Review and Meta-Analysis.” JAMA Network Open 4 (11): e2134147.