Code for Pelosi, J.A., M.A. Bernal, T.J. Krabbenhoft, S. Galbo, C. Prada, M.A. Coffroth, and H.R. Lasker. "Fine-scale genomic, morphological, reproductive, and symbiont differences delimit the Caribbean octocorals Plexuara homomalla and P. kükenthali" https://link.springer.com/article/10.1007/s00338-021-02175-x
Data
This directory contains the assembled transcriptomes, annotation files, and alignments.
All sequence data has been deposited in NCBI.
Cleaned transcriptome reads are available under BioProject PRJNA675782.
Single loci sequenced via Sanger Dideoxy are available under accession numbers MW239684-MW239875.
Analysis
This directory contains R and markdown files describing each of the analyses.