Bioinformatics training series led by members of the Smithsonian community
##Videos of the talks Users connected to the SI Intranet can view video links here. Others, not connected to the SI network, can contact us via Github for video access.
##2016 Series Talks are on Thursdays from 2-3pm in WG33, Natural History Building.
| Date | Speaker | Topic | Links |
|---|---|---|---|
| 3/17/2016 | Andy Gottscho | PyRAD - a python pipeline for Restriction-Associated-DNA sequencing | Slides Example on Hydra: /pool/genomics/gottschoa/test_pyrad_module Sample param and job files |
| 3/24/2016 | Michael Trizna | Jupyter Notebook for workflow management | Slides Example notebook |
| 3/31/2016 | Paul Frandsen | Data partitioning | Slides Tutorial |
| 4/7/2016 | Rebecca Dikow | Genome Assembly | |
| 4/14/2016 | Vanessa Gonzalez | Gene Prediction (Augustus) | |
| 4/21/2016 | Carolyn Teplot | Analysis of coexpression patterns in genes |
##2015 Series
| Date | Speaker | Topic | Links |
|---|---|---|---|
| 4/20/2015 | Rebecca Dikow | Whole genome alignment/phylogeny | Slides |
| 4/27/2015 | Paul Frandsen | submitting to cluster with qsub, scripting | Hydra training site |
| 5/4/2015 | HC Lim | genotype and snp calling | Slides, GATK best practices videos (Broad) |
| 5/11/2015 | Cheryl Lewis Ames | gene prediction and annotation using Trinotate | Slides |
| 5/18/2015 | Missy Hawkins | sequence capture experiment design | Slides |
| 6/1/2015 | Matt Leray | metabarcoding data OTU calling, community-level analysis | Slides |
| 6/8/2015 | Ehsan Kayal | Phylogenomic analysis | Slides |
| 6/15/2015 | Matthew Kweskin | Tricking out your Mac: Installing analysis software on your Mac | Slides |
| 6/22/2015 | Monica C. Munoz-Torres | Web Apollo & Gene Ontology Resources for Functional Annotations | Web Apollo website |
| 6/29/2015 | Tammy Wilbert | RAD-seq library prep (pros/cons), some snp calling tools, population genomics analysis | Slides |