0.14.1

Fixed

• Fix stripes with missing image data for czi source.
• Fix possible cache deadlock for czi source.

0.14.0

Added

• Added add_missing_levels parameter to cli.

Fixed

• Missing ´label` parameter in bioformats cli.
• Change to empty WsiDicomizerMetadata for bioformat source.

0.13.2

Fixed

• Missing handling of pyramid index when creating WsiInstance using create_instance().

0.13.1

Fixed

• Missing handling of pyramid index when creating WsiInstance using create_instance().

0.13.0

Added

• Support for incorporating ICC profiles from source image if available. This is currently limited to images read by the OpenTile and OpenSlide source, and only for supported formats (primarily Aperio svs).

• If no ICC profile is present in the source file or the provided metadata, an empty profile will be used if the photometric interpretation requires it for DICOM compatibility. This behavior can be disabled with settings.insert_icc_profile_if_missing = False

0.12.1

Fixed

• Fixed missing support for Python 3.12.

0.12.0

Changed

• Replaced Dataset based metadata by modules-parameter to open() and convert() with metadata models from WsiDicom. Use the metadata-parameter to define metadata that should override any metadata found in the source file, and thedefault_metadata-parameter to define metadata that should be used if no other metadata is defiend.

Fixed

• Fixed fetching empty tile regions with tiffslide and openslide.

0.11.0

Changed

• Use Encoder from wsidicom for encoding data.
• Moved include_levels, include_label, and include_overview parameters to save().

Removed

• Support for Python 3.8

0.10.2

Fixed

• Update dependency requirements to allow newer tifffile and imagecodecs.

0.10.1

Fixed

• Incorrect tile size returned by BioformatsImageData _get_tile() on edge tiles.