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94 Open 61 Closed
94 Open 61 Closed
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Issues list

Doc suggestion
#180 opened May 17, 2024 by wsnoble
6
emission probability heatmap
#167 opened Mar 28, 2023 by YichaoOU
5
Using continuous and discrete tracks
#161 opened Feb 24, 2022 by corinsexton
2
--trainable-params and -p equivalent option not available for annotate or posterior
#156 opened Oct 28, 2021 by EricR86
Large verbosity numbers for "--verbose" breaks exisiting parsing of viterbi output
#155 opened Oct 28, 2021 by EricR86
@EricR86
Meanings of segment names like 13_Quiescent?
#150 opened Apr 26, 2021 by amadeusX
2
Segway produces annotations that are not stictly valid BED files
#149 opened Feb 2, 2021 by EricR86
1
Error while running segway train : "can't tie one track in multiple groups" and "Set of training windows is empty"
#148 opened Oct 29, 2020 by Cheryn-A
3
Support for IBM Spectrum LSF
#142 opened Jul 9, 2020 by EricR86
1
Training windows segway train phase bug Something isn't working major
#137 opened Mar 20, 2020 by EricR86
Disabling Gaussian splitting in single-Gaussian case bug Something isn't working minor
#133 opened Feb 19, 2019 by EricR86
Cannot create observations before training and annotation enhancement New feature or request minor
#132 opened Dec 14, 2018 by EricR86
Touchstone exists for simplereverse but is never checked bug Something isn't working minor
#131 opened Dec 13, 2018 by EricR86
Simpleseg jobs.instance.tab ocassionally has out of order output bug Something isn't working trivial
#130 opened Dec 10, 2018 by EricR86
1
Segway with EGBR enhancement New feature or request trivial
#129 opened Sep 5, 2018 by EricR86
Stale file handle error bug Something isn't working major
#128 opened Jun 29, 2018 by EricR86
3
Give users controls over track weights. major proposal
#127 opened Jun 25, 2018 by EricR86
2
Warn users when the number of windows exceed a threshold enhancement New feature or request minor
#124 opened Feb 21, 2018 by EricR86
5
Setting hard memory limit constraints fails on certain systems bug Something isn't working major
#123 opened Jan 30, 2018 by EricR86
save_gmtk_input() hides exception raised by genomedata enhancement New feature or request trivial
#122 opened Jan 26, 2018 by EricR86
1
--include-coord does not verify if the coordinates are valid before running Segway enhancement New feature or request trivial
#121 opened Jan 10, 2018 by EricR86
2
Fatal fdiffact1 error when using --semisupervised and --validation-coords together bug Something isn't working major
#120 opened Jan 3, 2018 by EricR86
1
--semisupervised mode fails when no tracks are specified bug Something isn't working minor
#119 opened Dec 20, 2017 by EricR86
Test segway_layer_bigbed fails due to difference in bigBed files bug Something isn't working minor
#118 opened Nov 16, 2017 by EricR86
Add feature to not annotate features where there is no data for regions over a certain bp/ruler threshold minor task
#116 opened Sep 14, 2017 by EricR86
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